Browse Element(s) Details


OsAffx.30446.1.S1_at

Description tigr:9638.m01530
TID=OsAffx.30446.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1838011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18350NANA10+8987788..8991340hypothetical protein
LOC_Os10g18360Os.1709.1.S1_x_at11/1110+8991814..8996558retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18364Os.11716.1.S1_at11/1110+8999272..9005164expressed protein
LOC_Os10g18370Os.7711.1.S1_at11/1110+9006514..9007842Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os10g18380OsAffx.30446.1.S1_at11/1110+9010894..9011933hypothetical protein
LOC_Os10g18390OsAffx.2524.1.S1_at9/1110+9014097..9017101hypothetical protein
LOC_Os10g18390Os.56255.1.S1_x_at2/1110+9014097..9017101hypothetical protein
LOC_Os10g18390Os.56255.1.S1_at1/1110+9014097..9017101hypothetical protein
LOC_Os10g18390OsAffx.19264.1.S1_at1/1110+9014097..9017101hypothetical protein
LOC_Os10g18400Os.46702.1.S1_at11/1110+9017673..9025056Beta-galactosidase precursor, putative, expressed
LOC_Os10g18410OsAffx.18289.1.S1_at10/1110+9030786..9031094hypothetical protein
LOC_Os10g18420OsAffx.30226.2.S1_x_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.2.S1_s_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.442.1.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.4.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_x_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.24587.1.S1_x_at1/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18430OsAffx.18290.1.S1_at11/1110+9035836..9036807agmatine coumaroyltransferase, putative
LOC_Os10g18430OsAffx.10096.1.S1_x_at1/1110+9035836..9036807agmatine coumaroyltransferase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30446.1.S1_at--554--2191Chr10:9011412..9011436 (25 bp)
ACACAACACGGCTTGGGCGTTCGGT
LOC_Os10g18380
OsAffx.30446.1.S1_at--1125--6691Chr10:9011394..9011418 (25 bp)
GTTCGGTTCTCAAGCGCAATTTCTA
LOC_Os10g18380
OsAffx.30446.1.S1_at--1017--4691Chr10:9011342..9011366 (25 bp)
GCGGCGCAAATTTCGCTGACGGTTG
LOC_Os10g18380
OsAffx.30446.1.S1_at--422--8071Chr10:9011298..9011322 (25 bp)
GGAGCAGTTTCTTTGAGCGCCTGGT
LOC_Os10g18380
OsAffx.30446.1.S1_at--347--8571Chr10:9011277..9011301 (25 bp)
TGGTTTGGCACGATCTACTCGCGAA
LOC_Os10g18380
OsAffx.30446.1.S1_at--145--4331Chr10:9011230..9011254 (25 bp)
CCATTTCGTGCGCTCGATGGGTAGA
LOC_Os10g18380
OsAffx.30446.1.S1_at--894--5331Chr10:9011165..9011189 (25 bp)
GAAGTTTGCAGCTCGTCGCTCGTAG
LOC_Os10g18380
OsAffx.30446.1.S1_at--1002--1251Chr10:9011115..9011139 (25 bp)
AGATATGGTTTCTGTCCTCTCCTGG
LOC_Os10g18380
OsAffx.30446.1.S1_at--83--7871Chr10:9011079..9011103 (25 bp)
GGTTTCCATGTTGGCCCATACGTAA
LOC_Os10g18380
OsAffx.30446.1.S1_at--575--7191Chr10:9011004..9011028 (25 bp)
GTCGGAATCTACTGGTGGGCTGTTC
LOC_Os10g18380
OsAffx.30446.1.S1_at--1080--6591Chr10:9010959..9010983 (25 bp)
GATTGGGTTACTATTCGAGCCCTCC
LOC_Os10g18380
Target Sequence 
ACACAACACGGCTTGGGCGTTCGGTTCTCAAGCGCAATTTCTAGGAGATGTGACGCGGTTTCCGCAGTTAGCGGCGCAAA
TTTCGCTGACGGTTGGAGCAGAGCCATGGGAGGCGGAGCAGTTTCTTTGAGCGCCTGGTTTGGCACGATCTACTCGCGAA
CCGCGTGCTTCGCGGGGTTGGCCCATTTCGTGCGCTCGATGGGTAGAGGCGTGGAGGCGGCACAGATCGCGCCAAGTCCA
AGCGCTAGAAGTTTGCAGCTCGTCGCTCGTAGCGGCGTGGTCTCCGGAAGAAAAGGGAGATATGGTTTCTGTCCTCTCCT
GGTTGGGCTGGTTGGTTTCCATGTTGGCCCATACGTAAAGGTGGATCATTATCATATTTTGGGCCAAGGATTTTTGGTCA
AGGCCTCCGTCGGAATCTACTGGTGGGCTGTTCTGGTGGTCAATTGGACTGGAGATTGGGTTACTATTCGAGCCCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30446.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis