Browse Element(s) Details


OsAffx.30513.1.S1_s_at

Description tigr:9638.m01974
TID=OsAffx.30513.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to truncated copper-binding protein CUTA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2320411/11Protein CutA, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23150OsAffx.20427.1.S1_at11/1110+11750672..11753497retrotransposon protein, putative, unclassified
LOC_Os10g23160NANA10+11754855..11756111ent-kaurenoic acid oxidase, putative
LOC_Os10g23180Os.18932.1.S1_at11/1110+11758871..11767257Cytochrome P450 family protein, expressed
LOC_Os10g23190OsAffx.29313.1.S1_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190OsAffx.22896.1.S1_x_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190Os.46314.2.S1_x_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190Os.10731.2.A1_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23204Os.9220.1.S1_at11/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.30513.1.S1_s_at11/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.30514.2.S1_s_at10/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204Os.56258.1.S1_at2/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.28551.1.S1_at1/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.28418.2.S1_x_at1/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23220Os.27757.1.A1_s_at11/1110+11782050..11784935expressed protein
LOC_Os10g23220Os.27757.1.A1_at11/1110+11782050..11784935expressed protein
LOC_Os10g23230OsAffx.18359.1.S1_at11/1110+11788254..11788841hypothetical protein
LOC_Os10g23240Os.32823.1.S1_x_at2/1110+11791407..11791689hypothetical protein
LOC_Os10g23250OsAffx.18360.1.S1_at11/1110+11801259..11803696hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009507cellular_componentchloroplast
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30513.1.S1_s_at--185--7771Chr10:11776898..11776922 (25 bp)
GGTGAGAAGTCTCAGCTCTTCAGCT
LOC_Os10g23204
OsAffx.30513.1.S1_s_at--550--1451Chr10:11776902..11776926 (25 bp)
AGAAGTCTCAGCTCTTCAGCTTCTG
LOC_Os10g23204
OsAffx.30513.1.S1_s_at--832--4811Chr10:11776912..11776936 (25 bp)
GCTCTTCAGCTTCTGCTCGAATGGA
LOC_Os10g23204
OsAffx.30513.1.S1_s_at--420--10531Chr10:11776916..11776940 (25 bp)
TTCAGCTTCTGCTCGAATGGAGTCT
LOC_Os10g23204
OsAffx.30513.1.S1_s_at--597--4911Chr10:11776920..11776944 (25 bp)
GCTTCTGCTCGAATGGAGTCTACTT
LOC_Os10g23204
OsAffx.30513.1.S1_s_at--1116--4771Chr10:11776926..11776950 (25 bp)
GCTCGAATGGAGTCTACTTCCACCA
LOC_Os10g23204
OsAffx.30513.1.S1_s_at--459--2971Chr10:11776931..11776955 (25 bp)
AATGGAGTCTACTTCCACCACTGTG
LOC_Os10g23204
OsAffx.30513.1.S1_s_at--679--6091Chr10:11776935..11776959 (25 bp)
GAGTCTACTTCCACCACTGTGCCTT
LOC_Os10g23204
OsAffx.30513.1.S1_s_at--515--8811Chr10:11776964..11776988 (25 bp)
TGTTGTGTATGTGACAGTTCCTAAT
LOC_Os10g23204
OsAffx.30513.1.S1_s_at--878--7431Chr10:11776968..11776992 (25 bp)
GTGTATGTGACAGTTCCTAATAAAG
LOC_Os10g23204
OsAffx.30513.1.S1_s_at--615--1611Chr10:11778240..11778264 (25 bp)
AGCTGGGAGCATTATAAGTGAGAAG
LOC_Os10g23204
Target Sequence 
GGTGAGAAGTCTCAGCTCTTCAGCTTCTGCTCGAATGGAGTCTACTTCCACCACTGTGCCTTCCATTGTTGTGTATGTGA
CAGTTCCTAATAAAGAAGCAGGAAAGAGGCTAGCTGGGAGCATTATAAGTGAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30513.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis