Browse Element(s) Details


OsAffx.30541.1.S1_at

Description tigr:9638.m02243
TID=OsAffx.30541.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2632011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26300NANA10+13293165..13293575hypothetical protein
LOC_Os10g26320OsAffx.30541.1.S1_at11/1110+13315054..13315323hypothetical protein
LOC_Os10g26330OsAffx.8146.1.S1_at11/1110+13319547..13320264retrotransposon protein, putative, unclassified
LOC_Os10g26340OsAffx.28856.1.S1_x_at1/1110+13327360..13329113Cytochrome P450 78A11, putative, expressed
LOC_Os10g26349NANA10+13332364..13332712NA
LOC_Os10g26360Os.41695.2.S1_x_at11/1110+13334726..13341459transposon protein, putative, Mutator sub-class
LOC_Os10g26360Os.41695.15.S1_s_at11/1110+13334726..13341459transposon protein, putative, Mutator sub-class
LOC_Os10g26360Os.41695.3.S1_x_at10/1110+13334726..13341459transposon protein, putative, Mutator sub-class
LOC_Os10g26360Os.41695.5.S1_x_at7/1110+13334726..13341459transposon protein, putative, Mutator sub-class
LOC_Os10g26360Os.41695.4.S1_x_at1/1110+13334726..13341459transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30541.1.S1_at--455--4251Chr10:13315090..13315114 (25 bp)
CCGGACGAAGTGGAGATCGATCTCA
LOC_Os10g26320
OsAffx.30541.1.S1_at--1018--2491Chr10:13315114..13315138 (25 bp)
AACATGCTTGGTCCGCTGGTGCTGA
LOC_Os10g26320
OsAffx.30541.1.S1_at--869--10851Chr10:13315121..13315145 (25 bp)
TTGGTCCGCTGGTGCTGAACCGAAT
LOC_Os10g26320
OsAffx.30541.1.S1_at--187--9291Chr10:13315125..13315149 (25 bp)
TCCGCTGGTGCTGAACCGAATTGGA
LOC_Os10g26320
OsAffx.30541.1.S1_at--890--2611Chr10:13315138..13315195 (25 bp)
AACCGAATTGGAGTAGAGGGTCATC
LOC_Os10g26320
OsAffx.30541.1.S1_at--65--7531Chr10:13315210..13315234 (25 bp)
GTGGAGCTCATGAAGCAGTTGTCGA
LOC_Os10g26320
OsAffx.30541.1.S1_at--941--4851Chr10:13315227..13315251 (25 bp)
GTTGTCGAAGCCAGGTGACCTTGGC
LOC_Os10g26320
OsAffx.30541.1.S1_at--1146--7371Chr10:13315241..13315265 (25 bp)
GTGACCTTGGCGACCGCATTAGCGA
LOC_Os10g26320
OsAffx.30541.1.S1_at--735--10871Chr10:13315247..13315271 (25 bp)
TTGGCGACCGCATTAGCGACGGCAC
LOC_Os10g26320
OsAffx.30541.1.S1_at--689--131Chr10:13315258..13315282 (25 bp)
ATTAGCGACGGCACGGTACTCGGCC
LOC_Os10g26320
OsAffx.30541.1.S1_at--696--1891Chr10:13315265..13315289 (25 bp)
ACGGCACGGTACTCGGCCTCGGTGT
LOC_Os10g26320
Target Sequence 
CCGGACGAAGTGGAGATCGATCTCAACATGCTTGGTCCGCTGGTGCTGAACCGAATTGGAGTAGAGGGTCATCGTGGATG
GAGGGGAGTGGAGCTCATGAAGCAGTTGTCGAAGCCAGGTGACCTTGGCGACCGCATTAGCGACGGCACGGTACTCGGCC
TCGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30541.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis