Browse Element(s) Details


OsAffx.8146.1.S1_at

Description gb:NM_196399.1
DB_XREF= gi:37534157
TID=OsAffx.8146.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein similar to putative retroelement (OSJNBa0044A10.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2633011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26320OsAffx.30541.1.S1_at11/1110+13315054..13315323hypothetical protein
LOC_Os10g26330OsAffx.8146.1.S1_at11/1110+13319547..13320264retrotransposon protein, putative, unclassified
LOC_Os10g26340OsAffx.28856.1.S1_x_at1/1110+13327360..13329113Cytochrome P450 78A11, putative, expressed
LOC_Os10g26349NANA10+13332364..13332712NA
LOC_Os10g26360Os.41695.2.S1_x_at11/1110+13334726..13341459transposon protein, putative, Mutator sub-class
LOC_Os10g26360Os.41695.15.S1_s_at11/1110+13334726..13341459transposon protein, putative, Mutator sub-class
LOC_Os10g26360Os.41695.3.S1_x_at10/1110+13334726..13341459transposon protein, putative, Mutator sub-class
LOC_Os10g26360Os.41695.5.S1_x_at7/1110+13334726..13341459transposon protein, putative, Mutator sub-class
LOC_Os10g26360Os.41695.4.S1_x_at1/1110+13334726..13341459transposon protein, putative, Mutator sub-class
LOC_Os10g26370Os.46306.1.S1_x_at5/1110+13345039..13357452transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26370Os.45976.1.S1_x_at3/1110+13345039..13357452transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8146.1.S1_at--720--8931Chr10:13320097..13320121 (25 bp)
TGACCGTGCATCTTGGGCTCGGATG
LOC_Os10g26330
OsAffx.8146.1.S1_at--439--4131Chr10:13320069..13320093 (25 bp)
CGCGTGGTGCTCACATGGCTTTATG
LOC_Os10g26330
OsAffx.8146.1.S1_at--304--2111Chr10:13320057..13320081 (25 bp)
ACATGGCTTTATGGCACCATCGCCG
LOC_Os10g26330
OsAffx.8146.1.S1_at--91--8551Chr10:13320023..13320047 (25 bp)
TGGAGTCGGTCATGCAACCCGCCGT
LOC_Os10g26330
OsAffx.8146.1.S1_at--684--7451Chr10:13319990..13320014 (25 bp)
GTGTCGTTTGGCTCTGCCTCGAGCA
LOC_Os10g26330
OsAffx.8146.1.S1_at--689--10811Chr10:13319929..13319954 (25 bp)
TTGTCGGCGCATTCCACAACTTCTT
LOC_Os10g26330
OsAffx.8146.1.S1_at--298--9891Chr10:13319879..13319903 (25 bp)
TACTACCGGCGCCTCAAAGCTATGG
LOC_Os10g26330
OsAffx.8146.1.S1_at--224--10091Chr10:13319859..13319883 (25 bp)
TATGGCGGACACACAAAGCGAACTC
LOC_Os10g26330
OsAffx.8146.1.S1_at--242--8911Chr10:13319772..13319796 (25 bp)
TGAGAATCTCCGAACAATTCTTCCT
LOC_Os10g26330
OsAffx.8146.1.S1_at--102--7211Chr10:13319730..13319754 (25 bp)
GTCGTTCATCGAAGCTCGCAGTCAA
LOC_Os10g26330
OsAffx.8146.1.S1_at--1026--2531Chr10:13319707..13319731 (25 bp)
AACTCATCCTCGCTGAGATCAACAA
LOC_Os10g26330
Target Sequence 
TGACCGTGCATCTTGGGCTCGGATGGACCGCGTGGTGCTCACATGGCTTTATGGCACCATCGCCGCCGACCTCCTGGAGT
CGGTCATGCAACCCGCCGTCACCGCGCGTGTCGTTTGGCTCTGCCTCGAGCAGATCTTCCTCGGCCACCATGAGCAGCGC
CATGACCTTGTCGGCGCATTCCACAACTTCTTCCAAGGCGATCTCTCCGCCAACGACTACTACCGGCGCCTCAAAGCTAT
GGCGGACACACAAAGCGAACTCGGCAACCCTGTCACCGATCGGCAGCTCGTCCTCGCCATGCTGCAAGGGGTAAACCCTA
AATATGAGAATCTCCGAACAATTCTTCCTCTACAACGCCCGTTACCGTCGTTCATCGAAGCTCGCAGTCAACTCATCCTC
GCTGAGATCAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8146.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis