Browse Element(s) Details


OsAffx.3062.1.S1_at

Description tigr:9630.m05355
TID=OsAffx.3062.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5407011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54020OsAffx.24860.1.S1_at11/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54020OsAffx.3060.1.S1_at11/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54020Os.50833.1.S1_at1/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54030Os.25444.1.S1_at11/112+33091467..33092941Polygalacturonase family protein, expressed
LOC_Os02g54030OsAffx.3061.1.S1_x_at9/112+33091467..33092941Polygalacturonase family protein, expressed
LOC_Os02g54040OsAffx.24861.1.S1_at11/112+33096757..33097035hypothetical protein
LOC_Os02g54050OsAffx.12633.1.S1_at11/112+33101876..33102544AP2 domain containing protein, expressed
LOC_Os02g54060Os.49874.2.S1_x_at11/112+33108913..3311143420 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os02g54070OsAffx.3062.1.S1_at11/112+33112011..33117694hypothetical protein
LOC_Os02g54080Os.51632.1.S1_at11/112+33118548..33121760expressed protein
LOC_Os02g54080Os.10495.1.S1_at11/112+33118548..33121760expressed protein
LOC_Os02g54090Os.7407.1.S1_x_at11/112+33123672..33128174expressed protein
LOC_Os02g54100OsAffx.12634.1.S1_at11/112+33132223..33135903hypothetical protein
LOC_Os02g54110Os.52170.1.S1_at11/112+33141034..33148236HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006506biological_processGPI anchor biosynthesis
GO:0008654biological_processphospholipid biosynthesis
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3062.1.S1_at--521--7671Chr02:33116215..33116239 (25 bp)
GGGATTTTTCTTTATGTCAGCAGTC
LOC_Os02g54070
OsAffx.3062.1.S1_at--1153--7131Chr02:33116237..33116261 (25 bp)
GTCTTGGATCAAGCTCTTTTGTGGA
LOC_Os02g54070
OsAffx.3062.1.S1_at--803--6891Chr02:33116271..33116295 (25 bp)
GTATACATGGCACTATCTCACTTCT
LOC_Os02g54070
OsAffx.3062.1.S1_at--768--2031Chr02:33116282..33116306 (25 bp)
ACTATCTCACTTCTACTCTGTATTT
LOC_Os02g54070
OsAffx.3062.1.S1_at--975--3291Chr02:33116348..33116372 (25 bp)
CAAATTCAGCGGTAGCACGAGCAGA
LOC_Os02g54070
OsAffx.3062.1.S1_at--553--9731Chr02:33116423..33116447 (25 bp)
TAATCCCCAGTATGCGAGACGGTTA
LOC_Os02g54070
OsAffx.3062.1.S1_at--727--9591Chr02:33116462..33116486 (25 bp)
TCATTATCATTCTTGTTTCTGGGAG
LOC_Os02g54070
OsAffx.3062.1.S1_at--543--10491Chr02:33116516..33116540 (25 bp)
TTAACTGGGTTCACTTTCCTGACAT
LOC_Os02g54070
OsAffx.3062.1.S1_at--1036--171Chr02:33116539..33116563 (25 bp)
ATTTCAAAGTCACTGGCCCAAGCTG
LOC_Os02g54070
OsAffx.3062.1.S1_at--477--2251Chr02:33116588..33116612 (25 bp)
AAATTATCTCCGTTCTTGCAGTTGT
LOC_Os02g54070
OsAffx.3062.1.S1_at--563--2291Chr02:33116994..33117018 (25 bp)
AAATGCAATACCTCTTCTGCTCATT
LOC_Os02g54070
Target Sequence 
GGGATTTTTCTTTATGTCAGCAGTCTTGGATCAAGCTCTTTTGTGGAAGAAGAACAGTATACATGGCACTATCTCACTTC
TACTCTGTATTTAATATTTCTCATCAAGACGACACAATCAATGCTGAGAGAATCAAATTCAGCGGTAGCACGAGCAGAAG
GCAAGATTTTTCATGGAAATGACTGCTCTTATTTTACTAGCTGTAAATTAATCCCCAGTATGCGAGACGGTTACAAGTTG
TGCACTATCATTATCATTCTTGTTTCTGGGAGAATTCTAAGAGCTTGGCATCAAGGTGGGGTTAACTGGGTTCACTTTCC
TGACATTTCAAAGTCACTGGCCCAAGCTGATTCATTTGTTGTAAAGGCTCTTCAAATTATCTCCGTTCTTGCAGTTGTGC
AGCCCATAAATGCAATACCTCTTCTGCTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis