Browse Element(s) Details


OsAffx.3069.1.S1_at

Description tigr:9630.m05399
TID=OsAffx.3069.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5445011/11hypro1, putative
LOC_Os11g294001/116-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54390OsAffx.3068.1.S1_x_at11/112+33324640..33325563hypro1, putative
LOC_Os02g54400Os.14491.2.S1_x_at2/112+33328089..33331789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54400Os.47463.1.S1_x_at1/112+33328089..33331789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54410OsAffx.21289.1.S1_at1/112+33334661..33339617transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54420OsAffx.24864.1.S1_x_at11/112+33340465..33341388hypro1, putative, expressed
LOC_Os02g54430OsAffx.9060.1.S1_at6/112+33343419..33345131transposon protein, putative, Pong sub-class
LOC_Os02g54440Os.41074.1.S1_at3/112+33345609..33347572transposon protein, putative, Pong sub-class
LOC_Os02g54450OsAffx.3069.1.S1_at11/112+33348307..33349248hypro1, putative
LOC_Os02g54460NANA2+33350361..33351483hypothetical protein
LOC_Os02g54470Os.4986.1.S1_at10/112+33353475..3335552560S ribosomal protein L33-B, putative, expressed
LOC_Os02g54480OsAffx.24866.2.S1_at11/112+33356001..33357978hypothetical protein
LOC_Os02g54480OsAffx.24866.1.S1_at4/112+33356001..33357978hypothetical protein
LOC_Os02g54490OsAffx.3070.1.S1_at11/112+33358394..33365118expressed protein
LOC_Os02g54500Os.7331.2.S1_s_at11/112+33366546..33374358expressed protein
LOC_Os02g54500OsAffx.12639.1.S1_at11/112+33366546..33374358expressed protein
LOC_Os02g54500Os.7331.1.A1_at10/112+33366546..33374358expressed protein
LOC_Os02g54500Os.49132.1.S1_at6/112+33366546..33374358expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0004616molecular_functionphosphogluconate dehydrogenase (decarboxylating) activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3069.1.S1_at--381--4151Chr02:33348693..33348717 (25 bp)
CGCGACATGTACCACGGGTTCCTGA
LOC_Os02g54450
OsAffx.3069.1.S1_at--312--7911Chr02:33348677..33348701 (25 bp)
GGTTCCTGAACCCGTGCCACATCGA
LOC_Os02g54450
OsAffx.3069.1.S1_at--1009--1791Chr02:33348653..33348677 (25 bp)
ACCCGGCGTGGCAGTACATGTCCGG
LOC_Os02g54450
OsAffx.3069.1.S1_at--414--8351Chr02:33348649..33348673 (25 bp)
GGCGTGGCAGTACATGTCCGGGATG
LOC_Os02g54450
OsAffx.3069.1.S1_at--865--6011Chr02:33348561..33348585 (25 bp)
GAGATCGGGTACGAGGACGACGTGT
LOC_Os02g54450
OsAffx.3069.1.S1_at--894--5371Chr02:33348505..33348529 (25 bp)
GAAGAACAGGTTCGGCGAGGAGCCG
LOC_Os02g54450
OsAffx.3069.1.S1_at--109--751Chr02:33348477..33348501 (25 bp)
ATGTACGACTACCTGGACAGGGAGA
LOC_Os02g54450
OsAffx.3069.1.S1_at--119--5711Chr02:33348471..33348495 (25 bp)
GACTACCTGGACAGGGAGATGTACG
LOC_Os02g54450
OsAffx.3069.1.S1_at--699--1572Chr11:16562381..16562524 (24 bp)
AGCTCATCGCCGACACGGTGGCCGT
LOC_Os11g29400
OsAffx.3069.1.S1_at--644--1791Chr02:33348339..33348363 (25 bp)
ACCGATGGGCTCAAGCCTTCCAAGA
LOC_Os02g54450
OsAffx.3069.1.S1_at--794--4051Chr02:33348337..33348361 (25 bp)
CGATGGGCTCAAGCCTTCCAAGATG
LOC_Os02g54450
Target Sequence 
CGCGACATGTACCACGGGTTCCTGAACCCGTGCCACATCGACCCGGCGTGGCAGTACATGTCCGGGATGGGGTACATCGT
GTCGTGGGACGTGGCGGAGTGGATCGCGGCGTCGCCGGAGCTGCGGGGCCGGGAGATCGGGTACGAGGACGACGTGTTCG
GCCGGTGGTTGCGCGGGGCAGGCAAGGGGAAGAACAGGTTCGGCGAGGAGCCGCGGATGTACGACTACCTGGACAGGGAG
ATGTACGGCGCCGACGTCAACTGCTTCCGCCACGAGCTCATCGCCGACACGGTGGCCGTGCACAAGCTCAAGGACCGCCT
CAAGTGGGCGCGCACGCTCCGCTTCTTCAACGCCACCGATGGGCTCAAGCCTTCCAAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis