Browse Element(s) Details


OsAffx.30761.1.S1_at

Description tigr:9640.m00011
TID=OsAffx.30761.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0111011/11hypothetical protein
LOC_Os11g011094/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01050OsAffx.30758.1.S1_at11/1112+27025..28438hypothetical protein
LOC_Os12g01050Os.27037.1.A1_at1/1112+27025..28438hypothetical protein
LOC_Os12g01060Os.27486.2.S1_at11/1112+34977..38954RNase P subunit p30 family protein
LOC_Os12g01060Os.15933.1.A1_s_at11/1112+34977..38954RNase P subunit p30 family protein
LOC_Os12g01060OsAffx.31533.1.S1_x_at10/1112+34977..38954RNase P subunit p30 family protein
LOC_Os12g01080Os.27486.1.S1_x_at3/1112+41336..41868CCT motif family protein
LOC_Os12g01080Os.27486.1.S1_at3/1112+41336..41868CCT motif family protein
LOC_Os12g01080Os.53942.1.S1_x_at2/1112+41336..41868CCT motif family protein
LOC_Os12g01080Os.53942.1.S1_at1/1112+41336..41868CCT motif family protein
LOC_Os12g01090NANA12+42782..49102retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01100OsAffx.30760.1.S1_at11/1112+49744..50678hypothetical protein
LOC_Os12g01110OsAffx.30761.1.S1_at11/1112+51050..53138hypothetical protein
LOC_Os12g01110OsAffx.30761.2.S1_s_at11/1112+51050..53138hypothetical protein
LOC_Os12g01120OsAffx.31534.1.S1_at11/1112+63393..64004Homeobox domain containing protein
LOC_Os12g01130OsAffx.7451.1.S1_at11/1112+69546..70241hypothetical protein
LOC_Os12g01140Os.8642.1.S1_a_at11/1112+74285..88965Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os12g01140Os.8642.4.S1_x_at11/1112+74285..88965Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os12g01140Os.53644.1.S1_at1/1112+74285..88965Nonphototropic hypocotyl protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30761.1.S1_at--1062--7832Chr12:51823..51847 (25 bp)
GGTACATCACGTGTAGAGGATAGGA
LOC_Os12g01110
OsAffx.30761.1.S1_at--69--9791Chr12:51558..51798 (25 bp)
TAAGGTGGAGTGTACATCGTTGTCT
LOC_Os12g01110
OsAffx.30761.1.S1_at--304--8752Chr12:51548..51788 (25 bp)
TGTACATCGTTGTCTCTTCTTCAAA
LOC_Os12g01110
OsAffx.30761.1.S1_at--962--2092Chr12:51545..51565 (21 bp)
ACATCGTTGTCTCTTCTTCAAACAT
LOC_Os12g01110
OsAffx.30761.1.S1_at--850--6631Chr12:51540..51564 (25 bp)
GTTGTCTCTTCTTCAAACATGTTCG
LOC_Os12g01110
OsAffx.30761.1.S1_at--1083--9551Chr12:51531..51555 (25 bp)
TCTTCAAACATGTTCGTTCGACTCT
LOC_Os12g01110
OsAffx.30761.1.S1_at--855--6711Chr12:51520..51544 (25 bp)
GTTCGTTCGACTCTAACAACAGCAA
LOC_Os12g01110
OsAffx.30761.1.S1_at--254--9532Chr12:51509..51533 (25 bp)
TCTAACAACAGCAAGATGCACCGAC
LOC_Os12g01110
OsAffx.30761.1.S1_at--841--9952Chr12:51105..51129 (25 bp)
TACCCTTCACTTTAGCTACATCGAT
LOC_Os12g01110
OsAffx.30761.1.S1_at--537--10452Chr12:51094..51118 (25 bp)
TTAGCTACATCGATTACAACACAAA
LOC_Os12g01110
OsAffx.30761.1.S1_at--354--10492Chr12:51081..51105 (25 bp)
TTACAACACAAAAGGCTATCATCTG
LOC_Os12g01110
Target Sequence 
GGTACATCACGTGTAGAGGATAGGAGGAGGGTTTTGTTGTGGAAGAGGATAAGGTGGAGTGTACATCGTTGTCTCTTCTT
CAAACATGTTCGTTCGACTCTAACAACAGCAAGATGCACCGACACTACTTCCTCTATGCCGCTCTATGCACTGCGACCGT
CTCTGAGGCTTTCTTTGCTAGTCCCCTTCGACACTAGTGCAATACTCAAGTTGGTCGACAACCTCGCGCGCACGGTATTG
GCAGCACCATTGTGTGCATCTTCCCGAGTTGTCCCTAGGCTTGGCAAACCTGGTGTGATACCTTGTTCTCCAGTGTCACC
ATCTTTGTCTTCAGCACATCATTTTACACCTTGGTCCTTGGAGCCATCCTGCGCACGCACGACCACTCTACGATGCCCCT
TGTGCGTCCTGTGGCTCGGCTACCTCGTCATCAGCACCACCGACTTCAGCTACATCGACCGCAGCTACTCTATGCATGGC
TTCATCGACCATGGCTACGTTTTACCCTTCACTTTAGCTACATCGATTACAACACAAAAGGCTATCATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30761.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis