Browse Element(s) Details


OsAffx.3077.1.S1_at

Description tigr:9630.m05486
TID=OsAffx.3077.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5522011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55180Os.24797.1.A1_at11/112+33791497..33797992Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os02g55190Os.50902.1.S1_at10/112+33799150..33800616expressed protein
LOC_Os02g55200Os.32481.1.S1_s_at11/112+33801145..33809546expressed protein
LOC_Os02g55200Os.10314.1.S1_a_at11/112+33801145..33809546expressed protein
LOC_Os02g55200Os.32481.2.S1_x_at6/112+33801145..33809546expressed protein
LOC_Os02g55200Os.32481.1.S1_at5/112+33801145..33809546expressed protein
LOC_Os02g55210OsAffx.24880.1.S1_at11/112+33809943..33812507carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55220OsAffx.3077.1.S1_at11/112+33815753..33817887hypothetical protein
LOC_Os02g55230OsAffx.12651.1.S1_at11/112+33818582..33822379carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55230OsAffx.3076.1.S1_s_at1/112+33818582..33822379carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55240OsAffx.24881.1.S1_at10/112+33823002..33823853hypothetical protein
LOC_Os02g55250OsAffx.27510.1.S1_at11/112+33828040..33832179Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g55260Os.24391.1.A1_at11/112+33832794..33837763DEAD/DEAH box helicase family protein, expressed
LOC_Os02g55270OsAffx.24882.1.S1_at11/112+33838016..33839278NLI interacting factor-like phosphatase family protein
LOC_Os02g55280OsAffx.12653.1.S1_at11/112+33840744..33841912NLI interacting factor-like phosphatase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3077.1.S1_at--1159--6211Chr02:33817112..33817136 (25 bp)
GATGGAACCTAGTTCTTTCCCGATA
LOC_Os02g55220
OsAffx.3077.1.S1_at--392--3051Chr02:33817074..33817098 (25 bp)
AATCGCCATTAGTAGGTGCAATCTC
LOC_Os02g55220
OsAffx.3077.1.S1_at--559--7771Chr02:33817060..33817084 (25 bp)
GGTGCAATCTCGCAAGCACAATTGT
LOC_Os02g55220
OsAffx.3077.1.S1_at--715--3171Chr02:33817041..33817065 (25 bp)
AATTGTCTACCATTGATTGCCCCAT
LOC_Os02g55220
OsAffx.3077.1.S1_at--57--8171Chr02:33817015..33817039 (25 bp)
GGAACAATTCCAATAGTGCGCAACA
LOC_Os02g55220
OsAffx.3077.1.S1_at--609--7291Chr02:33817000..33817024 (25 bp)
GTGCGCAACAACAATTTGGCCAACA
LOC_Os02g55220
OsAffx.3077.1.S1_at--135--2211Chr02:33816968..33816992 (25 bp)
ACAACGTATTGGCACACTGGCTAAT
LOC_Os02g55220
OsAffx.3077.1.S1_at--167--6051Chr02:33816249..33816273 (25 bp)
GAGATATATGGCATGCAGGCATCAA
LOC_Os02g55220
OsAffx.3077.1.S1_at--320--10191Chr02:33816127..33816151 (25 bp)
TATAGGTGCTGGGTCTTGTGTATAT
LOC_Os02g55220
OsAffx.3077.1.S1_at--1112--371Chr02:33815906..33815930 (25 bp)
ATCACAATTGCCCTGGTTTCATGCA
LOC_Os02g55220
OsAffx.3077.1.S1_at--1032--5231Chr02:33815852..33815876 (25 bp)
GAATCAATCCCATATCTGTCTATAA
LOC_Os02g55220
Target Sequence 
GATGGAACCTAGTTCTTTCCCGATAGGGATGGATATCAAATCGCCATTAGTAGGTGCAATCTCGCAAGCACAATTGTCTA
CCATTGATTGCCCCATTGGAACAATTCCAATAGTGCGCAACAACAATTTGGCCAACATGATGGTACAACGTATTGGCACA
CTGGCTAATGATGATTTACCAATGCTGGGAGCAGGAATTGAATATTGGGATGAGATATATGGCATGCAGGCATCAATAAA
TGTCTATGAACCAAGTGTGAAGAAAGATAGCAAAGATGTTAGTGCATCATGGATACAAATTAGTGTTGTCCCAAAAGGTA
CCAACGGAATTGGTATAGGTGCTGGGTCTTGTGTATATCCAAGAAGTGGTGATAGCTTTGCTAGGTTCCATATTCGTTGG
GATAATGAAGAATTGAACAAGAGTTGCAGTGATCACAATTGCCCTGGTTTCATGCAAGTTAGTCACAGTGTTGGTCTTGG
AGGAAGAATCAATCCCATATCTGTCTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis