Browse Element(s) Details


OsAffx.30797.1.S1_at

Description tigr:9639.m00259
TID=OsAffx.30797.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to GA20 oxidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g035109/111-aminocyclopropane-1-carboxylate oxidase 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03470Os.9497.1.S1_at10/1111+1328443..1332416homoserine dehydrogenase family protein, expressed
LOC_Os11g03484OsAffx.7468.1.S1_at11/1111+1334134..1343979MatE family protein, expressed
LOC_Os11g03484Os.11241.1.S1_at8/1111+1334134..1343979MatE family protein, expressed
LOC_Os11g03500Os.52496.1.S1_at2/1111+1347039..1351398MATE efflux family protein, expressed
LOC_Os11g03500Os.11241.1.S1_at1/1111+1347039..1351398MATE efflux family protein, expressed
LOC_Os11g03510Os.23290.2.S1_s_at11/1111+1356279..13580331-aminocyclopropane-1-carboxylate oxidase 1, putative
LOC_Os11g03510OsAffx.30797.1.S1_at9/1111+1356279..13580331-aminocyclopropane-1-carboxylate oxidase 1, putative
LOC_Os11g03520Os.55334.1.S1_at11/1111+1358246..1359545GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os11g03530Os.5915.1.S1_at11/1111+1359727..1363128phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os11g03540Os.16683.1.S1_at2/1111+1363704..1368690AP2 domain containing protein, expressed
LOC_Os11g03550OsAffx.31562.2.S1_s_at11/1111+1371706..1374653hypothetical protein
LOC_Os11g03550OsAffx.31562.1.S1_at11/1111+1371706..1374653hypothetical protein
LOC_Os11g03560OsAffx.31563.1.S1_at11/1111+1379713..1380036hypothetical protein
LOC_Os11g03570Os.27524.1.S1_at10/1111+1380840..1388477expressed protein
LOC_Os11g03570Os.27524.2.S1_x_at5/1111+1380840..1388477expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0010261biological_processorgan senescence (sensu Magnoliophyta)
GO:0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30797.1.S1_at--750--771Chr11:1356326..1356399 (25 bp)
ATGTGCAGGAGCTTCTGTTGATTCC
LOC_Os11g03510
OsAffx.30797.1.S1_at--577--971NONE
AGGAGCTTCTGTTGATTCCTCAAGC
NONE
OsAffx.30797.1.S1_at--1127--6572Chr12:1261617..1261641 (25 bp)
GATTCCTCAAGCTACATGTCAGATG
NONE
OsAffx.30797.1.S1_at--718--6511Chr11:1356978..1357002 (25 bp)
GATATTTCTTTTAGCAAGTTGACAA
LOC_Os11g03510
OsAffx.30797.1.S1_at--993--6652Chr12:1261661..1261684 (24 bp)
GTTGACAAAGACACCAGTACTGATG
NONE
OsAffx.30797.1.S1_at--1109--1711Chr11:1357007..1357031 (25 bp)
ACCAGTACTGATGTGCTTTATGTCT
LOC_Os11g03510
OsAffx.30797.1.S1_at--647--7311NONE
GTGCTTTATGTCTACTAAGCGACAG
NONE
OsAffx.30797.1.S1_at--1049--2651Chr11:1357768..1357791 (24 bp)
AAGCGACAGAACATATTGGACTCAG
LOC_Os11g03510
OsAffx.30797.1.S1_at--750--3571Chr11:1357778..1357802 (25 bp)
CATATTGGACTCAGCTTTGATGCAA
LOC_Os11g03510
OsAffx.30797.1.S1_at--1001--9651Chr11:1357788..1357812 (25 bp)
TCAGCTTTGATGCAATTCATGGCCA
LOC_Os11g03510
OsAffx.30797.1.S1_at--746--1791Chr11:1357928..1357952 (25 bp)
ACCGCACACTGATCTGGATGGCTTG
LOC_Os11g03510
Target Sequence 
ATGTGCAGGAGCTTCTGTTGATTCCTCAAGCTACATGTCAGATGAAGATATTTCTTTTAGCAAGTTGACAAAGACACCAG
TACTGATGTGCTTTATGTCTACTAAGCGACAGAACATATTGGACTCAGCTTTGATGCAATTCATGGCCAAGGCCATTGGT
GTTGAGCCGAAGTCGTTGTCAAGTGTATTTGAAGGGCAAGCTAGGGGTTTGAGGATGAACTACTATCCACCGTGCTTGAA
AGCCGACAAGGTGTTGGGTTTGTCACCGCACACTGATCTGGATGGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis