Browse Element(s) Details


OsAffx.3082.1.S1_at

Description tigr:9630.m05537
TID=OsAffx.3082.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g558209/11hypothetical protein
LOC_Os02g100701/11Citrate synthase 4, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55780Os.7287.1.S1_s_at10/112+34142310..34149678Cyclin, N-terminal domain containing protein
LOC_Os02g55780Os.7287.1.S1_x_at6/112+34142310..34149678Cyclin, N-terminal domain containing protein
LOC_Os02g55790Os.26004.2.S1_at11/112+34152482..34155627hypothetical protein
LOC_Os02g55790Os.26004.1.S1_x_at4/112+34152482..34155627hypothetical protein
LOC_Os02g55790Os.26004.3.S1_x_at3/112+34152482..34155627hypothetical protein
LOC_Os02g55800OsAffx.3081.1.S1_at10/112+34158581..34160484hypothetical protein
LOC_Os02g55810Os.12270.1.S1_at9/112+34161819..34162475expressed protein
LOC_Os02g55820OsAffx.3082.1.S1_at9/112+34166241..34168129hypothetical protein
LOC_Os02g55830Os.34131.1.S1_s_at10/112+34172692..34174827hAT family dimerisation domain containing protein
LOC_Os02g55840Os.49357.1.S1_at11/112+34176218..34178715expressed protein
LOC_Os02g55840Os.17702.2.S1_x_at1/112+34176218..34178715expressed protein
LOC_Os02g55850OsAffx.24887.1.S1_at11/112+34183635..34184018hypothetical protein
LOC_Os02g55860NANA2+34185762..34188116retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006099biological_processtricarboxylic acid cycle
GO:0006635biological_processfatty acid beta-oxidation
GO:0005739cellular_componentmitochondrion
GO:0005777cellular_componentperoxisome
GO:0003878molecular_functionATP citrate synthase activity
GO:0004108molecular_functioncitrate (Si)-synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3082.1.S1_at--725--2751Chr02:34168069..34168093 (25 bp)
AAGACACGACAATGGCCTCATCAGT
LOC_Os02g55820
OsAffx.3082.1.S1_at--593--8431Chr02:34168056..34168080 (25 bp)
GGCCTCATCAGTACCACTCAAAAAT
LOC_Os02g55820
OsAffx.3082.1.S1_at--776--3011Chr02:34167811..34167832 (22 bp)
AATGCTTGTGCCATGCTGAGTTGCT
LOC_Os02g55820
OsAffx.3082.1.S1_at--47--3871Chr02:34167796..34167820 (25 bp)
CTGAGTTGCTGACTGAGTTTGTCAA
LOC_Os02g55820
OsAffx.3082.1.S1_at--912--6071NONE
GAGTTTGTCAATTGGATCTTCAAGG
NONE
OsAffx.3082.1.S1_at--829--3414Chr02:34166451..34166475 (25 bp)
CAGAATTTTCACATATGCTTGGGTT
LOC_Os02g55820
OsAffx.3082.1.S1_at--1023--10754Chr02:34166427..34166451 (25 bp)
TTGATGGTGTCAAAATGCTTGGGTT
LOC_Os02g55820
OsAffx.3082.1.S1_at--630--4931Chr02:34166411..34166435 (25 bp)
GCTTGGGTTGATGCAAATATGTGTA
LOC_Os02g55820
OsAffx.3082.1.S1_at--304--7433Chr02:34135387..34135488 (25 bp)
GTGTAACAAAACATACCTGGTTTCT
NONE
OsAffx.3082.1.S1_at--584--2514Chr02:34166305..34166406 (25 bp)
AACATACCTGGTTTCTTCCAGTGAT
LOC_Os02g55820
OsAffx.3082.1.S1_at--730--6835Chr02:34166295..34166319 (25 bp)
GTTTCTTCCAGTGATCATGAAGGTC
LOC_Os02g55820
Target Sequence 
AAGACACGACAATGGCCTCATCAGTACCACTCAAAAATTCTGATAAAACAAGGTCAATGCTTGTGCCATGCTGAGTTGCT
GACTGAGTTTGTCAATTGGATCTTCAAGGATTGGAAAACTATAGCAGGTGATAATGCACTGGATTATGCAGCAGAATTTT
CACATATGCTTGGGTTTGATGGTGTCAAAATGCTTGGGTTGATGCAAATATGTGTAACAAAACATACCTGGTTTCTTCCA
GTGATCATGAAGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3082.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis