Browse Element(s) Details


OsAffx.30830.1.S1_at

Description tigr:9639.m00481
TID=OsAffx.30830.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0565011/11mRNA decapping enzyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05600Os.53499.1.S1_at11/1111+2535682..2538894expressed protein
LOC_Os11g05614Os.54623.1.S2_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed
LOC_Os11g05614Os.54623.1.S1_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed
LOC_Os11g05630OsAffx.30829.2.S1_at1/1111+2550135..2550680SOS2-like protein kinase, putative
LOC_Os11g05630OsAffx.30829.2.S1_x_at1/1111+2550135..2550680SOS2-like protein kinase, putative
LOC_Os11g05640OsAffx.18691.1.S1_at11/1111+2556939..2559110bZIP transcription factor family protein, expressed
LOC_Os11g05640Os.57499.1.S1_x_at11/1111+2556939..2559110bZIP transcription factor family protein, expressed
LOC_Os11g05650OsAffx.30830.1.S1_at11/1111+2561105..2564404mRNA decapping enzyme, putative, expressed
LOC_Os11g05650Os.8763.1.S1_at11/1111+2561105..2564404mRNA decapping enzyme, putative, expressed
LOC_Os11g05650Os.51912.1.S1_at10/1111+2561105..2564404mRNA decapping enzyme, putative, expressed
LOC_Os11g05660Os.55611.1.S1_s_at11/1111+2564900..2566295F-box domain containing protein, expressed
LOC_Os11g05680OsAffx.20484.1.S1_x_at1/1111+2573598..2574206hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30830.1.S1_at--1048--8951Chr11:2563249..2563273 (25 bp)
TGCAGCCATAGATGGTCCCCTTGAA
LOC_Os11g05650
OsAffx.30830.1.S1_at--1098--4591Chr11:2563283..2563307 (25 bp)
GCGACCACCACTATAGTTTCTGATG
LOC_Os11g05650
OsAffx.30830.1.S1_at--363--631Chr11:2563305..2563329 (25 bp)
ATGCTCCTGATGAATCCCTGGTTAA
LOC_Os11g05650
OsAffx.30830.1.S1_at--978--131Chr11:2563329..2563529 (25 bp)
ATTACTTCAGTAGTGCTGCTAGCAT
LOC_Os11g05650
OsAffx.30830.1.S1_at--200--8271Chr11:2563531..2563555 (25 bp)
GGCAGTGTCTCAAATGCTCCAATGG
LOC_Os11g05650
OsAffx.30830.1.S1_at--988--2871Chr11:2563560..2563584 (25 bp)
AAGGGCGCATCCATCCTCTGAGAGT
LOC_Os11g05650
OsAffx.30830.1.S1_at--1146--8891Chr11:2563578..2563602 (25 bp)
TGAGAGTGTTGCAACTCCCCATGTG
LOC_Os11g05650
OsAffx.30830.1.S1_at--852--771Chr11:2563598..2563622 (25 bp)
ATGTGCCCTTGATCATTCCATCTGC
LOC_Os11g05650
OsAffx.30830.1.S1_at--1009--451Chr11:2563617..2563641 (25 bp)
ATCTGCTACTCCGACACATCAAATA
LOC_Os11g05650
OsAffx.30830.1.S1_at--714--711Chr11:2563685..2563709 (25 bp)
ATGATACTAATGTCCACACTGCCCG
LOC_Os11g05650
OsAffx.30830.1.S1_at--510--3791Chr11:2563703..2563727 (25 bp)
CTGCCCGTTCAGCAAATCTTGTAAC
LOC_Os11g05650
Target Sequence 
TGCAGCCATAGATGGTCCCCTTGAACCTTCGCCAGCGACCACCACTATAGTTTCTGATGCTCCTGATGAATCCCTGGTTA
ATTACTTCAGTAGTGCTGCTAGCATTGGCAGTGTCTCAAATGCTCCAATGGCTGGAAGGGCGCATCCATCCTCTGAGAGT
GTTGCAACTCCCCATGTGCCCTTGATCATTCCATCTGCTACTCCGACACATCAAATACCCCCTCCTTTAGTCGGCTCATC
AGCTCCGCCACTGCCCCTCCATGATACTAATGTCCACACTGCCCGTTCAGCAAATCTTGTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis