Browse Element(s) Details


OsAffx.30892.1.S1_at

Description tigr:9639.m00833
TID=OsAffx.30892.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0884010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08760Os.9658.1.S1_at5/1111+4654891..4658106Pectinesterase family protein
LOC_Os11g08770OsAffx.25936.7.S1_s_at11/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.1.S1_s_at11/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.2.S1_x_at4/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.5.S1_x_at2/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08780NANA11+4664225..4664440hypothetical protein
LOC_Os11g08790Os.19439.2.S1_at11/1111+4665104..4666395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08800OsAffx.17922.1.S1_x_at5/1111+4666677..4668998hypothetical protein
LOC_Os11g08810Os.10827.1.S1_x_at11/1111+4669674..4672961transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08810Os.46055.2.S1_x_at5/1111+4669674..4672961transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08820OsAffx.18753.3.S1_x_at1/1111+4674852..4675538hypothetical protein
LOC_Os11g08830OsAffx.18753.3.S1_x_at4/1111+4676567..4677510kelch repeat-containing F-box family protein, putative
LOC_Os11g08830OsAffx.18753.3.S1_at3/1111+4676567..4677510kelch repeat-containing F-box family protein, putative
LOC_Os11g08830OsAffx.22433.3.S1_s_at2/1111+4676567..4677510kelch repeat-containing F-box family protein, putative
LOC_Os11g08840OsAffx.30892.1.S1_at10/1111+4679452..4680615hypothetical protein
LOC_Os11g08850NANA11+4685094..4686462retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08860Os.8169.1.S1_at10/1111+4687378..4688578expressed protein
LOC_Os11g08870Os.53818.1.S1_at7/1111+4694022..4699515retrotransposon protein, putative, unclassified
LOC_Os11g08880OsAffx.30891.1.S1_at11/1111+4701168..4701798hypothetical protein
LOC_Os11g08880OsAffx.30891.1.S1_x_at8/1111+4701168..4701798hypothetical protein
LOC_Os11g08889OsAffx.1196.1.S1_at3/1111+4705407..4706564hypothetical protein
LOC_Os11g08889OsAffx.1196.1.S1_x_at1/1111+4705407..4706564hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30892.1.S1_at--20--7391Chr11:4680557..4680581 (25 bp)
GTGAGCTTTTACAGCGCAAGCACCA
LOC_Os11g08840
OsAffx.30892.1.S1_at--325--2731Chr11:4680540..4680564 (25 bp)
AAGCACCAGGGCACTCGGCATGCAC
LOC_Os11g08840
OsAffx.30892.1.S1_at--445--4991Chr11:4680523..4680547 (25 bp)
GCATGCACGCGGAAGCGACAATGGT
LOC_Os11g08840
OsAffx.30892.1.S1_at--759--2671NONE
AAGCGGCAACGGTACAATGTTTTCA
NONE
OsAffx.30892.1.S1_at--434--6813Chr10:16023921..16023945 (25 bp)
GTTTTCATTGCATTCCCATGTGACA
NONE
OsAffx.30892.1.S1_at--800--5612Chr03:22316105..22316125 (21 bp)
GACAAATATCTATGCTTATCCTTTA
NONE
OsAffx.30892.1.S1_at--927--2711Chr11:4679641..4679767 (25 bp)
AAGCATGATCTCAGGTGCTCCAGCA
LOC_Os11g08840
OsAffx.30892.1.S1_at--966--9211Chr11:4679623..4679647 (25 bp)
TCCAGCACCAACACTCATTTATGAC
LOC_Os11g08840
OsAffx.30892.1.S1_at--493--7194Chr11:4637201..4637225 (25 bp)
GTCGGCTCGTCGTTGCTTGTCTGCT
NONE
OsAffx.30892.1.S1_at--826--7173Chr11:4637219..4637243 (25 bp)
GTCTGCTCATGATCAGTGACGCTAT
NONE
OsAffx.30892.1.S1_at--34--6453Chr11:4637229..4637253 (25 bp)
GATCAGTGACGCTATCCTGGCCGCA
NONE
Target Sequence 
GTGAGCTTTTACAGCGCAAGCACCAGGGCACTCGGCATGCACGCGGAAGCGACAATGGTGGAGCAAGTGGCAGCGGCGAC
GATGGTGGAGCAAGAAGCGGCAACGGTACAATGTTTTCATTGCATTCCCATGTGACAAATATCTATGCTTATCCTTTACT
AAGCATGATCTCAGGTGCTCCAGCACCAACACTCATTTATGACGCCGCCATCATCATGGATCCTCGTCGGCTCGTCGTTG
CTTGTCTGCTCATGATCAGTGACGCTATCCTGGCCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis