Browse Element(s) Details


OsAffx.30898.1.S1_at

Description tigr:9639.m00878
TID=OsAffx.30898.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0927010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09230OsAffx.30896.1.S1_at11/1111+4941971..4943680expressed protein
LOC_Os11g09230Os.51889.1.S1_x_at2/1111+4941971..4943680expressed protein
LOC_Os11g09240OsAffx.22492.1.S1_at1/1111+4945372..4951526retrotransposon protein, putative, unclassified
LOC_Os11g09240OsAffx.22492.1.S1_x_at1/1111+4945372..4951526retrotransposon protein, putative, unclassified
LOC_Os11g09250Os.31312.5.S1_x_at5/1111+4952158..4955416retrotransposon protein, putative, unclassified
LOC_Os11g09250Os.31312.2.S1_x_at4/1111+4952158..4955416retrotransposon protein, putative, unclassified
LOC_Os11g09260Os.51889.1.S1_at11/1111+4961051..4962931expressed protein
LOC_Os11g09260Os.51889.1.S1_x_at11/1111+4961051..4962931expressed protein
LOC_Os11g09270OsAffx.30898.1.S1_at10/1111+4964702..4965853hypothetical protein
LOC_Os11g09280Os.10985.1.S1_at11/1111+4967059..4970854Protein disulfide-isomerase precursor, putative, expressed
LOC_Os11g09290NANA11+4972825..4975422retrotransposon protein, putative, unclassified
LOC_Os11g09300NANA11+4978545..4984107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g09310Os.17200.1.S1_at10/1111+4986813..4988731Zinc knuckle family protein, expressed
LOC_Os11g09329Os.20320.1.S1_at11/1111+4989449..5002099VHS domain containing protein, expressed
LOC_Os11g09329Os.16476.1.A1_at11/1111+4989449..5002099VHS domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30898.1.S1_at--89--4631Chr11:4965442..4965466 (25 bp)
GCGAGGTTCAGGGTGGCCGACGTGC
LOC_Os11g09270
OsAffx.30898.1.S1_at--336--1771Chr11:4965342..4965366 (25 bp)
ACCTGATGGCCGTGCATCCGCGGCT
LOC_Os11g09270
OsAffx.30898.1.S1_at--340--3711NONE
CTACGCGGCGCAGGGATGAAAACAT
NONE
OsAffx.30898.1.S1_at--228--5531Chr11:4964825..4964849 (25 bp)
GAAAACATTTTCTCCGCACGATCAA
LOC_Os11g09270
OsAffx.30898.1.S1_at--234--3591Chr11:4964820..4964844 (25 bp)
CATTTTCTCCGCACGATCAATTTAG
LOC_Os11g09270
OsAffx.30898.1.S1_at--1147--9491Chr11:4964815..4964839 (25 bp)
TCTCCGCACGATCAATTTAGATCAT
LOC_Os11g09270
OsAffx.30898.1.S1_at--519--6431Chr11:4964796..4964820 (25 bp)
GATCATATGAAAGACCCACACGTAT
LOC_Os11g09270
OsAffx.30898.1.S1_at--36--5811Chr11:4964784..4964808 (25 bp)
GACCCACACGTATACATCGACAAAT
LOC_Os11g09270
OsAffx.30898.1.S1_at--369--531Chr11:4964769..4964793 (25 bp)
ATCGACAAATACACTCTGATGAGGC
LOC_Os11g09270
OsAffx.30898.1.S1_at--863--331Chr11:4964761..4964785 (25 bp)
ATACACTCTGATGAGGCACGATCAA
LOC_Os11g09270
OsAffx.30898.1.S1_at--910--6291Chr11:4964752..4964776 (25 bp)
GATGAGGCACGATCAAAGAAACAGA
LOC_Os11g09270
Target Sequence 
GCGAGGTTCAGGGTGGCCGACGTGCTGGAGAAGCAGAACGGCCGGCGTGAGACGGCCCTGCACGACGCCGTCAGGCTCGG
CGACGAGCGCCTCGTCGGCCACCTGATGGCCGTGCATCCGCGGCTCGCCCGTCTCCCCGGCGGCGACGGGATGTCGCCGT
TGTACCAGGCGATCTCACTGGGGCACGACCGCATCGCGGAGCTCCTGCATCAGCAAGGGGGCGACGAGCTCTCGTATTCT
GGACCGGCCGGCCAAACTGCCCTGCACGCTGCTGTCCTACGCGGCGCAGGGATGAAAACATTTTCTCCGCACGATCAATT
TAGATCATATGAAAGACCCACACGTATACATCGACAAATACACTCTGATGAGGCACGATCAAAGAAACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis