Browse Element(s) Details


OsAffx.30905.2.S1_at

Description tigr:9639.m00913
TID=OsAffx.30905.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0968011/11expressed protein
LOC_Os11g096907/11F-box domain containing protein
LOC_Os11g099603/11hypothetical protein
LOC_Os11g099701/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09620OsAffx.30902.1.S1_at11/1111+5136909..5140810F-box domain containing protein
LOC_Os11g09630OsAffx.30903.1.S1_at11/1111+5142712..5145486F-box domain containing protein
LOC_Os11g09640Os.24499.1.S1_at11/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640Os.24499.2.S1_at8/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640OsAffx.30905.1.S1_at1/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09650NANA11+5153036..5154375retrotransposon protein, putative, unclassified
LOC_Os11g09660NANA11+5155250..5156647retrotransposon protein, putative, unclassified
LOC_Os11g09670OsAffx.18767.1.S1_at11/1111+5159981..5162213F-box domain containing protein, expressed
LOC_Os11g09680Os.17219.2.S1_s_at11/1111+5164307..5166740expressed protein
LOC_Os11g09680OsAffx.30905.2.S1_at11/1111+5164307..5166740expressed protein
LOC_Os11g09680Os.17219.1.S1_at10/1111+5164307..5166740expressed protein
LOC_Os11g09680Os.17219.2.S1_x_at3/1111+5164307..5166740expressed protein
LOC_Os11g09690OsAffx.30905.3.S1_at11/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690OsAffx.30905.2.S1_at7/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690Os.17219.2.S1_x_at4/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690OsAffx.30905.4.S1_at1/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09700Os.32285.1.S1_at2/1111+5173963..5174537Flavonol 3-O-glucosyltransferase, putative
LOC_Os11g09710OsAffx.30906.1.S1_at11/1111+5178191..5179575expressed protein
LOC_Os11g09720Os.46053.2.S1_x_at8/1111+5180249..5183483transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g09730NANA11+5187897..5188196retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30905.2.S1_at--860--1271Chr11:5166076..5166100 (25 bp)
AGATCTGTTCCAAGGTATACCTTCT
LOC_Os11g09680
OsAffx.30905.2.S1_at--598--2892Chr11:5170453..5170477 (25 bp)
AAGGTATACCTTCTCTAATTGGCCA
LOC_Os11g09690
OsAffx.30905.2.S1_at--621--6872Chr11:5170450..5170474 (25 bp)
GTATACCTTCTCTAATTGGCCAATT
LOC_Os11g09690
OsAffx.30905.2.S1_at--628--312Chr11:5170448..5170472 (25 bp)
ATACCTTCTCTAATTGGCCAATTGA
LOC_Os11g09690
OsAffx.30905.2.S1_at--723--8453Chr11:5166045..5166069 (25 bp)
GGCCAATTGATTACTTGTTGATATT
LOC_Os11g09680
OsAffx.30905.2.S1_at--566--10391Chr11:5166021..5166045 (25 bp)
TTTTGGGCATTTTTCTATTGACCTT
LOC_Os11g09680
OsAffx.30905.2.S1_at--864--8631Chr11:5166018..5166042 (25 bp)
TGGGCATTTTTCTATTGACCTTAAA
LOC_Os11g09680
OsAffx.30905.2.S1_at--1006--693Chr11:5333639..5333663 (25 bp)
ATGTTTAATTTCTGACAGGGACCTA
LOC_Os11g09960
OsAffx.30905.2.S1_at--657--9734Chr11:5333634..5333658 (25 bp)
TAATTTCTGACAGGGACCTAAACAT
LOC_Os11g09960
OsAffx.30905.2.S1_at--1009--6651Chr11:5165894..5165918 (25 bp)
GTTGAAATCAAATGCGAAACGGTTG
LOC_Os11g09680
OsAffx.30905.2.S1_at--376--172Chr11:5165832..5165856 (25 bp)
ATTTAACATACGTAACATTCTTCAT
LOC_Os11g09680
Target Sequence 
AGATCTGTTCCAAGGTATACCTTCTCTAATTGGCCAATTGATTACTTGTTGATATTTTTGGGCATTTTTCTATTGACCTT
AAAATGTTTAATTTCTGACAGGGACCTAAACATAGAATGAAAATCAAAGGAAACTGCCATTCAATGGATAGTTCACTTGT
AATATCAGCACATCTTGAGATAGTTGAAATCAAATGCGAAACGGTTGATAAGAGAGTACTCAAAGTTTTGAAGTATCTGT
CTACATTTAACATACGTAACATTCTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30905.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis