Browse Element(s) Details


OsAffx.31009.1.S1_at

Description tigr:9639.m01531
TID=OsAffx.31009.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1663011/11hypothetical protein
LOC_Os09g147701/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g241501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16590Os.52841.1.S1_at11/1111+9171035..9176539ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
LOC_Os11g16600OsAffx.18881.1.S1_at10/1111+9181792..9183149hypothetical protein
LOC_Os11g16610NANA11+9185974..9190784retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g16619NANA11+9192653..9192997NA
LOC_Os11g16630OsAffx.31009.1.S1_at11/1111+9201076..9204655hypothetical protein
LOC_Os11g16630OsAffx.23366.2.S1_s_at1/1111+9201076..9204655hypothetical protein
LOC_Os11g16640Os.46314.3.S1_at1/1111+9206257..9209266transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16650OsAffx.18885.1.S1_at11/1111+9212106..9212770hypothetical protein
LOC_Os11g16660OsAffx.31008.1.S1_at9/1111+9213526..9215807hypothetical protein
LOC_Os11g16670OsAffx.18884.1.S1_at11/1111+9219354..9220795hypothetical protein
LOC_Os11g16680OsAffx.31007.1.S1_at11/1111+9222301..9226200Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31009.1.S1_at--674--2771Chr11:9204585..9204609 (25 bp)
AAGAGCCATTCCTTCCTATTCTGGT
LOC_Os11g16630
OsAffx.31009.1.S1_at--887--9451Chr11:9204566..9204590 (25 bp)
TCTGGTTGCTCCAGAACCAACAGTC
LOC_Os11g16630
OsAffx.31009.1.S1_at--611--1431Chr11:9204554..9204578 (25 bp)
AGAACCAACAGTCCCGCCGGAAGAT
LOC_Os11g16630
OsAffx.31009.1.S1_at--175--5351Chr11:9204538..9204559 (22 bp)
GAAGATATTTCCGACAACGACGAAA
LOC_Os11g16630
OsAffx.31009.1.S1_at--116--4112Chr11:9204327..9204548 (25 bp)
CGACAACGACGAAACGGCGCCATGG
LOC_Os11g16630
OsAffx.31009.1.S1_at--326--871Chr11:9204306..9204330 (25 bp)
ATGGCGATCAAAACAGCAGCCGAAG
LOC_Os11g16630
OsAffx.31009.1.S1_at--248--1393Chr01:13600360..13600384 (25 bp)
AGACGACGAGGTCCCAGCTAAGACC
LOC_Os01g24150
OsAffx.31009.1.S1_at--182--2671Chr11:9204225..9204249 (25 bp)
AAGCGAACCGTCATCAAAGGCGAAG
LOC_Os11g16630
OsAffx.31009.1.S1_at--8--731Chr11:9204154..9204178 (25 bp)
ATGTTGTTACCAATGTTGGGCCTAA
LOC_Os11g16630
OsAffx.31009.1.S1_at--1110--10831Chr11:9204139..9204163 (25 bp)
TTGGGCCTAAAGGAGAGTCGCTCGC
LOC_Os11g16630
OsAffx.31009.1.S1_at--435--2551Chr11:9204108..9204132 (25 bp)
AACTGCACGTGCCAAATTTAGTTCA
LOC_Os11g16630
Target Sequence 
AAGAGCCATTCCTTCCTATTCTGGTTGCTCCAGAACCAACAGTCCCGCCGGAAGATATTTCCGACAACGACGAAACGGCG
CCATGGCGATCAAAACAGCAGCCGAAGAAAAAAGATAAGTCAAAAGACGACGAGGTCCCAGCTAAGACCACCGGCTCAAA
GAAAAGCGAACCGTCATCAAAGGCGAAGAAAAGAAGGGGCGAGAGAAGCGTGAATAAAAAGGACGAAGGGTTTTATGTTG
TTACCAATGTTGGGCCTAAAGGAGAGTCGCTCGCCCCTCAAACTGCACGTGCCAAATTTAGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31009.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis