Browse Element(s) Details


OsAffx.31097.1.S1_at

Description tigr:9639.m02062
TID=OsAffx.31097.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2307011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g23040OsAffx.29376.1.S1_x_at1/1111+12768053..12772899retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23040OsAffx.18193.1.S1_at1/1111+12768053..12772899retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23050OsAffx.7175.1.S1_at11/1111+12774013..12776619hypothetical protein
LOC_Os11g23060OsAffx.25819.1.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.13875.1.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.25819.2.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.25819.3.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.25367.1.S1_at1/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23070OsAffx.31097.1.S1_at11/1111+12794607..12798961hypothetical protein
LOC_Os11g23070OsAffx.13875.1.S1_at2/1111+12794607..12798961hypothetical protein
LOC_Os11g23080Os.36149.1.S1_x_at10/1111+12800530..12802942expressed protein
LOC_Os11g23080Os.18078.1.S1_at3/1111+12800530..12802942expressed protein
LOC_Os11g23080Os.9016.1.S1_x_at1/1111+12800530..12802942expressed protein
LOC_Os11g23080Os.51412.1.S1_at1/1111+12800530..12802942expressed protein
LOC_Os11g23090OsAffx.10496.1.S1_at1/1111+12809369..12812299retrotransposon protein, putative, unclassified
LOC_Os11g23090OsAffx.20628.2.S1_x_at1/1111+12809369..12812299retrotransposon protein, putative, unclassified
LOC_Os11g23100OsAffx.22722.1.S1_at1/1111+12812756..12818749retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23100OsAffx.1646.1.S1_x_at1/1111+12812756..12818749retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23110NANA11+12822118..12823137hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31097.1.S1_at--1112--6991Chr11:12796849..12796870 (22 bp)
GTACTCGTTATTTCAATGGGCTTCA
LOC_Os11g23070
OsAffx.31097.1.S1_at--131--1071Chr11:12797795..12797819 (25 bp)
AGGGATCAAGCTCATGTTCAAGTCA
LOC_Os11g23070
OsAffx.31097.1.S1_at--934--10671Chr11:12797847..12797871 (25 bp)
TTCCACCGATGTCTCCATGGAGGAG
LOC_Os11g23070
OsAffx.31097.1.S1_at--109--2631Chr11:12797905..12797929 (25 bp)
AACCTCGACCTCATAGGAGACCGGG
LOC_Os11g23070
OsAffx.31097.1.S1_at--141--6331Chr11:12797931..12797955 (25 bp)
GATGCAGGGCTATCACATGCTCAAG
LOC_Os11g23070
OsAffx.31097.1.S1_at--621--7091Chr11:12798770..12798794 (25 bp)
GTCACAGCCACCTCATCAAAATGTT
LOC_Os11g23070
OsAffx.31097.1.S1_at--887--8412Chr11:12798802..12798826 (25 bp)
GGCCGAAGTTCGTGATCTCTTTGAG
LOC_Os11g23070
OsAffx.31097.1.S1_at--38--1631Chr11:12798825..12798849 (25 bp)
AGCTGGTGTTCGTCGATGGACTCCT
LOC_Os11g23070
OsAffx.31097.1.S1_at--691--8531Chr11:12798841..12798865 (25 bp)
TGGACTCCTGCTCATAGTTCCTGAT
LOC_Os11g23070
OsAffx.31097.1.S1_at--128--3531Chr11:12798853..12798877 (25 bp)
CATAGTTCCTGATCCATCTGAAGCC
LOC_Os11g23070
OsAffx.31097.1.S1_at--951--6611Chr11:12798905..12798929 (25 bp)
GTTGGAACCGATCCGGAGGCATCAT
LOC_Os11g23070
Target Sequence 
GTACTCGTTATTTCAATGGGCTTCATGAAGAGAAGAATCACGGGTTTGTTCAAGAAGGGATCAAGCTCATGTTCAAGTCA
TCACCAAGATAAGTCGAGTACACACTCTTCCACCGATGTCTCCATGGAGGAGGTGGACACCTCGCCAAGGCTTCTCGATG
ACTCCAACCTCGACCTCATAGGAGACCGGGAGATGCAGGGCTATCACATGCTCAAGGATCGGCCATTTGCTGACACCCCA
GCATACGACCTAGAACTTCTTCAGAAAATAGGTACGGATGTTGATTTTCGTATTGTTTGGAAGGCTATAGGATGGGAGAA
ATTTGCTGTGGTAGATGAGCCAGGGCATGTCACAGCCACCTCATCAAAATGTTGCCAAACGGCCGAAGTTCGTGATCTCT
TTGAGCTGGTGTTCGTCGATGGACTCCTGCTCATAGTTCCTGATCCATCTGAAGCCACCGGTACCTCGTCCAAAACTGAC
GGTGTTGGAACCGATCCGGAGGCATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31097.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis