Browse Element(s) Details


OsAffx.31129.1.S1_at

Description tigr:9639.m02267
TID=OsAffx.31129.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2549011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25430OsAffx.5008.1.S1_at2/1111+13998208..13999999retrotransposon protein, putative, unclassified
LOC_Os11g25440OsAffx.24114.1.S1_at11/1111+14000917..14001668hypothetical protein
LOC_Os11g25440Os.52448.1.S1_x_at1/1111+14000917..14001668hypothetical protein
LOC_Os11g25454Os.10315.1.S1_at10/1111+14009504..14016057UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os11g25470OsAffx.7199.1.S1_at11/1111+14016650..14017506hypothetical protein
LOC_Os11g25470OsAffx.7199.2.S1_x_at1/1111+14016650..14017506hypothetical protein
LOC_Os11g25480OsAffx.19006.1.S1_at11/1111+14019116..14019521hypothetical protein
LOC_Os11g25490OsAffx.31129.1.S1_at11/1111+14021140..14022240hypothetical protein
LOC_Os11g25490OsAffx.10110.3.S1_s_at1/1111+14021140..14022240hypothetical protein
LOC_Os11g25500Os.24032.2.S1_at10/1111+14022382..14024499transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25500Os.7207.1.S1_at4/1111+14022382..14024499transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25510Os.56220.1.S1_at11/1111+14025422..14026945Protein kinase domain containing protein, expressed
LOC_Os11g25510OsAffx.4190.1.S1_x_at2/1111+14025422..14026945Protein kinase domain containing protein, expressed
LOC_Os11g25510OsAffx.26628.1.S1_x_at1/1111+14025422..14026945Protein kinase domain containing protein, expressed
LOC_Os11g25520Os.35344.18.S1_x_at9/1111+14035649..14041544transposon protein, putative, Mutator sub-class
LOC_Os11g25520Os.35344.3.S1_x_at8/1111+14035649..14041544transposon protein, putative, Mutator sub-class
LOC_Os11g25520OsAffx.22940.5.S1_x_at3/1111+14035649..14041544transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31129.1.S1_at--1085--3711Chr11:14022186..14022210 (25 bp)
CTAAAGGAGGTCTCTGCGGTGCCGT
LOC_Os11g25490
OsAffx.31129.1.S1_at--257--6151Chr11:14022159..14022183 (25 bp)
GAGGTGGTGGTGTGGTTTGCCGCTG
LOC_Os11g25490
OsAffx.31129.1.S1_at--128--7651Chr11:14022061..14022085 (25 bp)
GGGAGACCAAGGGAGCACGGGCAGT
LOC_Os11g25490
OsAffx.31129.1.S1_at--1094--5011Chr11:14021234..14021253 (20 bp)
GCAGTGGGCGTGACACCCGAGACAT
LOC_Os11g25490
OsAffx.31129.1.S1_at--1092--8351Chr11:14021228..14021252 (25 bp)
GGCGTGACACCCGAGACATGATGAC
LOC_Os11g25490
OsAffx.31129.1.S1_at--440--7371Chr11:14021225..14021249 (25 bp)
GTGACACCCGAGACATGATGACAAT
LOC_Os11g25490
OsAffx.31129.1.S1_at--298--5671Chr11:14021214..14021238 (25 bp)
GACATGATGACAATCGGCTTGGACT
LOC_Os11g25490
OsAffx.31129.1.S1_at--730--8951Chr11:14021207..14021231 (25 bp)
TGACAATCGGCTTGGACTCAGACTC
LOC_Os11g25490
OsAffx.31129.1.S1_at--810--491Chr11:14021202..14021226 (25 bp)
ATCGGCTTGGACTCAGACTCTGCAA
LOC_Os11g25490
OsAffx.31129.1.S1_at--1115--8511Chr11:14021195..14021219 (25 bp)
TGGACTCAGACTCTGCAAGTCCGAC
LOC_Os11g25490
OsAffx.31129.1.S1_at--1065--9471Chr11:14021184..14021208 (25 bp)
TCTGCAAGTCCGACCGGTCACATGC
LOC_Os11g25490
Target Sequence 
CTAAAGGAGGTCTCTGCGGTGCCGTGGGAGGTGGTGGTGTGGTTTGCCGCTGCTCCGGTCGATAGGGAGGGGGCGGCTGG
AGTTCGCCGGTGTGGTGGAGAGAGAGGAAGACGTGAGGAGATGAGGGGAGACCAAGGGAGCACGGGCAGTGGGCGTGACA
CCCGAGACATGATGACAATCGGCTTGGACTCAGACTCTGCAAGTCCGACCGGTCACATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis