Browse Element(s) Details


OsAffx.24114.1.S1_at

Description tigr:9639.m02262
TID=OsAffx.24114.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2544011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25390OsAffx.16187.1.S1_at1/1111+13972664..13975953retrotransposon, putative, centromere-specific
LOC_Os11g25390OsAffx.25367.1.S1_at1/1111+13972664..13975953retrotransposon, putative, centromere-specific
LOC_Os11g25400Os.52081.1.S1_at1/1111+13979657..13984973retrotransposon protein, putative, unclassified
LOC_Os11g25400OsAffx.31867.1.S1_x_at1/1111+13979657..13984973retrotransposon protein, putative, unclassified
LOC_Os11g25400Os.52731.1.S1_at1/1111+13979657..13984973retrotransposon protein, putative, unclassified
LOC_Os11g25400OsAffx.988.1.S1_at1/1111+13979657..13984973retrotransposon protein, putative, unclassified
LOC_Os11g25400OsAffx.23696.1.S1_x_at1/1111+13979657..13984973retrotransposon protein, putative, unclassified
LOC_Os11g25410Os.38395.3.S1_x_at11/1111+13986931..13990188Transposable element protein, putative, MuDR
LOC_Os11g25410Os.38395.2.S1_x_at9/1111+13986931..13990188Transposable element protein, putative, MuDR
LOC_Os11g25410Os.38395.5.S1_at2/1111+13986931..13990188Transposable element protein, putative, MuDR
LOC_Os11g25420OsAffx.13122.3.S1_at10/1111+13992742..13993384hypothetical protein
LOC_Os11g25420OsAffx.22604.1.S1_x_at1/1111+13992742..13993384hypothetical protein
LOC_Os11g25430OsAffx.5008.1.S1_at2/1111+13998208..13999999retrotransposon protein, putative, unclassified
LOC_Os11g25440OsAffx.24114.1.S1_at11/1111+14000917..14001668hypothetical protein
LOC_Os11g25440Os.52448.1.S1_x_at1/1111+14000917..14001668hypothetical protein
LOC_Os11g25454Os.10315.1.S1_at10/1111+14009504..14016057UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os11g25470OsAffx.7199.1.S1_at11/1111+14016650..14017506hypothetical protein
LOC_Os11g25470OsAffx.7199.2.S1_x_at1/1111+14016650..14017506hypothetical protein
LOC_Os11g25480OsAffx.19006.1.S1_at11/1111+14019116..14019521hypothetical protein
LOC_Os11g25490OsAffx.31129.1.S1_at11/1111+14021140..14022240hypothetical protein
LOC_Os11g25490OsAffx.10110.3.S1_s_at1/1111+14021140..14022240hypothetical protein
LOC_Os11g25500Os.24032.2.S1_at10/1111+14022382..14024499transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25500Os.7207.1.S1_at4/1111+14022382..14024499transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25510Os.56220.1.S1_at11/1111+14025422..14026945Protein kinase domain containing protein, expressed
LOC_Os11g25510OsAffx.4190.1.S1_x_at2/1111+14025422..14026945Protein kinase domain containing protein, expressed
LOC_Os11g25510OsAffx.26628.1.S1_x_at1/1111+14025422..14026945Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24114.1.S1_at--147--7611Chr11:14001541..14001565 (25 bp)
GGAGGAATAGCAAGGACGACGTCGG
LOC_Os11g25440
OsAffx.24114.1.S1_at--741--8391Chr11:14001504..14001528 (25 bp)
GGCCAGTCGGCCTCGGTTAACGGCA
LOC_Os11g25440
OsAffx.24114.1.S1_at--1143--3411Chr11:14001501..14001525 (25 bp)
CAGTCGGCCTCGGTTAACGGCAAGG
LOC_Os11g25440
OsAffx.24114.1.S1_at--590--2571Chr11:14001490..14001510 (21 bp)
AACGGCAAGGTCTCCGAGTCGCGGC
LOC_Os11g25440
OsAffx.24114.1.S1_at--5--9351Chr11:14001409..14001431 (23 bp)
TCGCGGCGGTGCAAGGCAAGATCTG
LOC_Os11g25440
OsAffx.24114.1.S1_at--342--8231Chr11:14001395..14001419 (25 bp)
GGCAAGATCTGCTGGAGGTCATCCC
LOC_Os11g25440
OsAffx.24114.1.S1_at--202--2811Chr11:14001392..14001416 (25 bp)
AAGATCTGCTGGAGGTCATCCCGGA
LOC_Os11g25440
OsAffx.24114.1.S1_at--754--6411Chr11:14001390..14001414 (25 bp)
GATCTGCTGGAGGTCATCCCGGAGA
LOC_Os11g25440
OsAffx.24114.1.S1_at--218--1391Chr11:14001197..14001221 (25 bp)
AGACCATCATGGATGCCGAGCCCGC
LOC_Os11g25440
OsAffx.24114.1.S1_at--105--1511Chr11:14001137..14001161 (25 bp)
AGCACTACCTCCATCGACGGCAAAC
LOC_Os11g25440
OsAffx.24114.1.S1_at--200--9691Chr11:14000971..14000995 (25 bp)
TCACGCTAACTCAGCAGCCACGTTG
LOC_Os11g25440
Target Sequence 
GGAGGAATAGCAAGGACGACGTCGGCGGCGACAACTCGGCCAGTCGGCCTCGGTTAACGGCAAGGTCTCCGAGTCGCGGC
GGTGCAAGGCAAGATCTGCTGGAGGTCATCCCGGAGAAGGTCAAGGGGAGCAGGGTGAAGACGGCGATGGAGAAGAGGTT
GGAGGAGGAGCAGCCTCGCCGGTGGGAGATGGCGTGGTGGAGCAACGACGTGATCGAGGAGGCGCGGAGCAAGCTGCTGG
AGAAGCGGCAGTGCAGCAGGGTGAAGGCGCTCCTCGGCGCCTTCGAGACCATCATGGATGCCGAGCCCGCCGGCGACGGC
GCCACCACCATCGCCGGCAAGCCGCAGCACTACCTCCATCGACGGCAAACCGCAGCACTACCTCCCAGGCACCCAGCTGC
CTACCCAAACGAGAAGAGTGAGAGGGAGAGAGAGAGAGGAGAAAGGGAGAGCCGGAGAGGAGGCGAGAGGGTGATGACGT
GGTCAGCTGATATGTGGGGTCCACGTGGGTCTCACGCTAACTCAGCAGCCACGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis