Browse Element(s) Details


OsAffx.13122.3.S1_at

Description tigr:9639.m02260
TID=OsAffx.13122.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2542010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25380Os.54774.1.S1_x_at2/1111+13964426..13968652retrotransposon, putative, centromere-specific
LOC_Os11g25380Os.54774.1.S1_at2/1111+13964426..13968652retrotransposon, putative, centromere-specific
LOC_Os11g25380OsAffx.27819.1.S1_x_at1/1111+13964426..13968652retrotransposon, putative, centromere-specific
LOC_Os11g25390OsAffx.16187.1.S1_at1/1111+13972664..13975953retrotransposon, putative, centromere-specific
LOC_Os11g25390OsAffx.25367.1.S1_at1/1111+13972664..13975953retrotransposon, putative, centromere-specific
LOC_Os11g25400Os.52081.1.S1_at1/1111+13979657..13984973retrotransposon protein, putative, unclassified
LOC_Os11g25400OsAffx.31867.1.S1_x_at1/1111+13979657..13984973retrotransposon protein, putative, unclassified
LOC_Os11g25400Os.52731.1.S1_at1/1111+13979657..13984973retrotransposon protein, putative, unclassified
LOC_Os11g25400OsAffx.988.1.S1_at1/1111+13979657..13984973retrotransposon protein, putative, unclassified
LOC_Os11g25400OsAffx.23696.1.S1_x_at1/1111+13979657..13984973retrotransposon protein, putative, unclassified
LOC_Os11g25410Os.38395.3.S1_x_at11/1111+13986931..13990188Transposable element protein, putative, MuDR
LOC_Os11g25410Os.38395.2.S1_x_at9/1111+13986931..13990188Transposable element protein, putative, MuDR
LOC_Os11g25410Os.38395.5.S1_at2/1111+13986931..13990188Transposable element protein, putative, MuDR
LOC_Os11g25420OsAffx.13122.3.S1_at10/1111+13992742..13993384hypothetical protein
LOC_Os11g25420OsAffx.22604.1.S1_x_at1/1111+13992742..13993384hypothetical protein
LOC_Os11g25430OsAffx.5008.1.S1_at2/1111+13998208..13999999retrotransposon protein, putative, unclassified
LOC_Os11g25440OsAffx.24114.1.S1_at11/1111+14000917..14001668hypothetical protein
LOC_Os11g25440Os.52448.1.S1_x_at1/1111+14000917..14001668hypothetical protein
LOC_Os11g25454Os.10315.1.S1_at10/1111+14009504..14016057UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os11g25470OsAffx.7199.1.S1_at11/1111+14016650..14017506hypothetical protein
LOC_Os11g25470OsAffx.7199.2.S1_x_at1/1111+14016650..14017506hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13122.3.S1_at--708--3811NONE
CTGCCACGTCGGTGCAATACGAGGC
NONE
OsAffx.13122.3.S1_at--1060--4011Chr11:13992893..13992913 (21 bp)
CGTCGGTGCAATACGAGGCATCGGC
LOC_Os11g25420
OsAffx.13122.3.S1_at--81--491Chr11:13992874..13992898 (25 bp)
ATCGGCGGACGAGCTGTACGTGCGG
LOC_Os11g25420
OsAffx.13122.3.S1_at--227--7691Chr11:13992850..13992874 (25 bp)
GGGTAGAGATCCTCCTTTCCTGCTT
LOC_Os11g25420
OsAffx.13122.3.S1_at--235--10671Chr11:13992834..13992858 (25 bp)
TTCCTGCTTTCGCAACCAGTTATGG
LOC_Os11g25420
OsAffx.13122.3.S1_at--244--5171Chr11:13992823..13992847 (25 bp)
GCAACCAGTTATGGCAATGGCACTC
LOC_Os11g25420
OsAffx.13122.3.S1_at--75--10111Chr11:13992814..13992838 (25 bp)
TATGGCAATGGCACTCAGCGCAACA
LOC_Os11g25420
OsAffx.13122.3.S1_at--326--8511Chr11:13992806..13992830 (25 bp)
TGGCACTCAGCGCAACAGCAGGTAG
LOC_Os11g25420
OsAffx.13122.3.S1_at--887--4111Chr11:13992796..13992820 (25 bp)
CGCAACAGCAGGTAGGCGTGCTAGT
LOC_Os11g25420
OsAffx.13122.3.S1_at--898--7311Chr11:13992779..13992803 (25 bp)
GTGCTAGTGGCAAGACCGAGAGTTT
LOC_Os11g25420
OsAffx.13122.3.S1_at--717--8431Chr11:13992772..13992796 (25 bp)
TGGCAAGACCGAGAGTTTTGTAACA
LOC_Os11g25420
Target Sequence 
CTGCCACGTCGGTGCAATACGAGGCATCGGCGGACGAGCTGTACGTGCGGGGTAGAGATCCTCCTTTCCTGCTTTCGCAA
CCAGTTATGGCAATGGCACTCAGCGCAACAGCAGGTAGGCGTGCTAGTGGCAAGACCGAGAGTTTTGTAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13122.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis