Browse Element(s) Details


OsAffx.31131.1.S1_at

Description tigr:9639.m02299
TID=OsAffx.31131.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2557011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25550OsAffx.31133.1.S1_at11/1111+14061558..14062619hypothetical protein
LOC_Os11g25560OsAffx.31130.1.S1_at10/1111+14068785..14071018expressed protein
LOC_Os11g25570OsAffx.31131.1.S1_at11/1111+14084854..14085562hypothetical protein
LOC_Os11g25590OsAffx.22947.1.S1_x_at7/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25590OsAffx.22947.3.S1_x_at5/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25590OsAffx.22947.5.S1_x_at4/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25590OsAffx.22947.2.S1_x_at4/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25590OsAffx.22947.5.S1_at3/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25600OsAffx.19014.1.S1_at11/1111+14103518..14104348hypothetical protein
LOC_Os11g25610Os.57095.1.S1_at11/1111+14105322..14107027Zinc finger, C2H2 type family protein, expressed
LOC_Os11g25620OsAffx.31132.1.S1_at11/1111+14110431..14111331hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31131.1.S1_at--1066--7371Chr11:14085463..14085486 (24 bp)
GTGACCGGAAACAACACCCTAGTGA
LOC_Os11g25570
OsAffx.31131.1.S1_at--746--7091Chr11:14085310..14085334 (25 bp)
GTCAGGTCCGGAAAGGTTTAGCCAG
LOC_Os11g25570
OsAffx.31131.1.S1_at--87--6831Chr11:14085295..14085319 (25 bp)
GTTTAGCCAGCAGAGTGTACGACAG
LOC_Os11g25570
OsAffx.31131.1.S1_at--1126--6111Chr11:14085283..14085307 (25 bp)
GAGTGTACGACAGAGAATCCTTCTC
LOC_Os11g25570
OsAffx.31131.1.S1_at--44--571Chr11:14085267..14085291 (25 bp)
ATCCTTCTCGATAAATCATCCCAAC
LOC_Os11g25570
OsAffx.31131.1.S1_at--1115--6491Chr11:14085008..14085032 (25 bp)
GATATCAACTAAGCAGCCCGTTCAA
LOC_Os11g25570
OsAffx.31131.1.S1_at--601--4511Chr11:14084993..14085017 (25 bp)
GCCCGTTCAACCAGTTGACACCGAA
LOC_Os11g25570
OsAffx.31131.1.S1_at--143--5631Chr11:14084977..14085001 (25 bp)
GACACCGAAGTCAGGGCAGAACAGA
LOC_Os11g25570
OsAffx.31131.1.S1_at--656--1411Chr11:14084960..14084984 (25 bp)
AGAACAGAACAGTCATGCAGATGGA
LOC_Os11g25570
OsAffx.31131.1.S1_at--801--9691Chr11:14084927..14084951 (25 bp)
TCAAGAGTCTGTATGTTCGGAAACT
LOC_Os11g25570
OsAffx.31131.1.S1_at--147--7531Chr11:14084885..14084909 (25 bp)
GTGGAACTTCCTGTCAACAACTGAT
LOC_Os11g25570
Target Sequence 
GTGACCGGAAACAACACCCTAGTGAAAGATACAAGGGTCAGGTCCGGAAAGGTTTAGCCAGCAGAGTGTACGACAGAGAA
TCCTTCTCGATAAATCATCCCAACTCAAGATATCAACTAAGCAGCCCGTTCAACCAGTTGACACCGAAGTCAGGGCAGAA
CAGAACAGTCATGCAGATGGAAAGGTCAATCAAGAGTCTGTATGTTCGGAAACTGAATGAGAGTCACTTTTGTGGAACTT
CCTGTCAACAACTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis