Browse Element(s) Details


OsAffx.31176.1.S1_x_at

Description tigr:9639.m02535
TID=OsAffx.31176.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2810410/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28030NANA11+15616968..15618851transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28040Os.46314.3.S1_at3/1111+15621198..15621550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28050OsAffx.23366.2.S1_s_at1/1111+15623381..15626975transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28060OsAffx.7230.1.S1_at11/1111+15627698..15628866Cytochrome P450 71C4, putative
LOC_Os11g28070OsAffx.19046.1.S1_at10/1111+15633400..15635999hypothetical protein
LOC_Os11g28080NANA11+15640679..15640945hypothetical protein
LOC_Os11g28104Os.46662.2.S1_s_at11/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104OsAffx.31176.1.S1_x_at10/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104Os.26767.1.A1_at9/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104Os.46662.2.S1_x_at2/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104OsAffx.21209.1.S1_at1/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28130Os.25910.1.S1_s_at11/1111+15661535..15662533expressed protein
LOC_Os11g28130Os.25910.1.S1_at11/1111+15661535..15662533expressed protein
LOC_Os11g28140OsAffx.10637.1.S1_s_at11/1111+15673104..15676790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28140OsAffx.10637.3.S1_s_at11/1111+15673104..15676790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28140OsAffx.10637.4.S1_s_at8/1111+15673104..15676790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150OsAffx.32056.1.S1_at11/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150OsAffx.32056.1.S1_x_at11/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150OsAffx.30536.1.S1_x_at1/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31176.1.S1_x_at--744--4151Chr11:15659485..15659509 (25 bp)
CGCGCCAACCTGTCGTCGGCTGGTG
LOC_Os11g28104
OsAffx.31176.1.S1_x_at--1095--4371Chr11:15659481..15659505 (25 bp)
CCAACCTGTCGTCGGCTGGTGGCGG
LOC_Os11g28104
OsAffx.31176.1.S1_x_at--162--1772Chr06:5876480..5876503 (23 bp)
ACGCTTCCCGGGAACACGCAGGTAT
NONE
OsAffx.31176.1.S1_x_at--200--2471Chr11:15659224..15659248 (25 bp)
AACACGCAGGTATGCAACGGCACCG
LOC_Os11g28104
OsAffx.31176.1.S1_x_at--504--7231Chr11:15659197..15659221 (25 bp)
GTCGCCGACGGCTCTTTCGCTGGCG
LOC_Os11g28104
OsAffx.31176.1.S1_x_at--536--8471Chr11:15659177..15659201 (25 bp)
TGGCGCGGCGCGTGGGCTCGTCGGT
LOC_Os11g28104
OsAffx.31176.1.S1_x_at--28--7491Chr11:15659166..15659190 (25 bp)
GTGGGCTCGTCGGTGACCTCGCGGC
LOC_Os11g28104
OsAffx.31176.1.S1_x_at--195--7711Chr11:15659051..15659074 (24 bp)
GGGTGCGCGCAGTGCCTGCCGGTGA
LOC_Os11g28104
OsAffx.31176.1.S1_x_at--696--5491Chr11:15659018..15659042 (25 bp)
GAACATCGATGGGTGCCCGCCGGAC
LOC_Os11g28104
OsAffx.31176.1.S1_x_at--1093--8311Chr11:15658968..15658993 (25 bp)
GGCTGCTTCATGAGTACTCCGACAA
LOC_Os11g28104
OsAffx.31176.1.S1_x_at--77--3631NONE
CTTCATGAGTACTCCGACAACCGTT
NONE
Target Sequence 
CGCGCCAACCTGTCGTCGGCTGGTGGCGGTGGTGGCTTCGCCACGGCGGCCGAGCCGCGCGCCGCCGCGCCGGCGTTCGC
GATGGCGCAGTGCCGCCCGTACGTCGCGGGGGCGGGCAGCTGCGCCGCGTGCTTCGACGCCGCGGCGTCGCGCCTCCGCG
CCAGGTGCGGCGCCGGCAACGGCGGGCGCGCCATCCTCGACGGCTGCGTCGTGAGGTACGAGAGCGCCGCCTTCTTCGAC
GGCCCGGCCACGCTTCCCGGGAACACGCAGGTATGCAACGGCACCGCCGTCGCCGACGGCTCTTTCGCTGGCGCGGCGCG
TGGGCTCGTCGGTGACCTCGCGGCCGCCGCGCCCCGCGCACCGGGGCTCGCCGCGGCGGCCGCTCGCGGCGGCGTGTACG
CGGCGGCGCAGTGCGTGGAGACGGTCGGGGAGGGCGGGTGCGCGCAGTGCCTGCCGGTGACGGCGAGGAACATCGATGGG
TGCCCGCCGGACTCCGACGGACGCGCCGTGGACGCCGGCTGCTTCATGAGTACTCCGACAACCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31176.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis