Browse Element(s) Details


OsAffx.31213.3.S1_s_at

Description tigr:9637.m02397
TID=OsAffx.31213.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ATPase, AAA family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2734011/11ATPase, AAA family protein
LOC_Os09g273507/11Protein kinase domain containing protein
LOC_Os11g299206/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27300OsAffx.30352.2.S1_at8/119+16594235..16601906retrotransposon protein, putative, unclassified
LOC_Os09g27310OsAffx.30352.4.S1_at9/119+16602552..16605767hypothetical protein
LOC_Os09g27310Os.39421.1.S1_at5/119+16602552..16605767hypothetical protein
LOC_Os09g27310OsAffx.20967.1.S1_x_at1/119+16602552..16605767hypothetical protein
LOC_Os09g27320NANA9+16609314..16610273hypothetical protein
LOC_Os09g27330Os.55306.1.S1_at11/119+16617064..16617782expressed protein
LOC_Os09g27340OsAffx.31213.3.S1_s_at11/119+16621011..16623375ATPase, AAA family protein
LOC_Os09g27350OsAffx.31213.2.S1_at11/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27350OsAffx.31213.1.S1_x_at9/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27350OsAffx.31213.3.S1_s_at7/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27360OsAffx.17930.1.S1_at11/119+16630080..16630607hypothetical protein
LOC_Os09g27370Os.7318.1.A1_at11/119+16632329..16635433Spc97/Spc98 family protein, expressed
LOC_Os09g27370Os.7318.2.S1_at11/119+16632329..16635433Spc97/Spc98 family protein, expressed
LOC_Os09g27380OsAffx.30055.1.S1_at11/119+16639056..16639825Zinc finger, C3HC4 type family protein
LOC_Os09g27390OsAffx.30056.1.S1_at11/119+16643542..16646280transposon protein, putative, unclassified
LOC_Os09g27400OsAffx.30057.1.S1_at10/119+16647821..16649401expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000087biological_processM phase of mitotic cell cycle
GO:0000910biological_processcytokinesis
GO:0006952biological_processdefense response
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0042023biological_processDNA endoreduplication
GO:0000307cellular_componentcyclin-dependent protein kinase holoenzyme complex
GO:0009574cellular_componentpreprophase band
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0016887molecular_functionATPase activity
GO:0030332molecular_functioncyclin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31213.3.S1_s_at--230--7811Chr09:16622595..16622619 (25 bp)
GGTCAGGTCTCCGTCAAAGTTTGAC
LOC_Os09g27340
OsAffx.31213.3.S1_s_at--863--7791Chr09:16622600..16622624 (25 bp)
GGTCTCCGTCAAAGTTTGACCTAAT
LOC_Os09g27340
OsAffx.31213.3.S1_s_at--1009--5831Chr09:16622617..16622641 (25 bp)
GACCTAATGTTCAAATCTCAAGATT
LOC_Os09g27340
OsAffx.31213.3.S1_s_at--86--3071Chr09:16622630..16622654 (25 bp)
AATCTCAAGATTGTGTTCTGTTAGG
LOC_Os09g27340
OsAffx.31213.3.S1_s_at--143--10593Chr09:16622645..16622669 (25 bp)
TTCTGTTAGGAATCGAGTGGGCTGC
LOC_Os09g27340
OsAffx.31213.3.S1_s_at--503--3054Chr09:16625511..16625535 (25 bp)
AATCGAGTGGGCTGCCAATGGGCCT
LOC_Os09g27350
OsAffx.31213.3.S1_s_at--71--7494Chr09:16625517..16625541 (25 bp)
GTGGGCTGCCAATGGGCCTGTACAA
LOC_Os09g27350
OsAffx.31213.3.S1_s_at--962--7554Chr09:16625530..16625554 (25 bp)
GGGCCTGTACAACCATTCATTCAAG
LOC_Os09g27350
OsAffx.31213.3.S1_s_at--1111--2634Chr09:16625540..16625564 (25 bp)
AACCATTCATTCAAGCTGGCCCAAG
LOC_Os09g27350
OsAffx.31213.3.S1_s_at--1098--94Chr09:16625544..16625568 (25 bp)
ATTCATTCAAGCTGGCCCAAGCAAA
LOC_Os09g27350
OsAffx.31213.3.S1_s_at--735--9714Chr09:16625550..16625574 (25 bp)
TCAAGCTGGCCCAAGCAAACCCAAG
LOC_Os09g27350
Target Sequence 
GGTCAGGTCTCCGTCAAAGTTTGACCTAATGTTCAAATCTCAAGATTGTGTTCTGTTAGGAATCGAGTGGGCTGCCAATG
GGCCTGTACAACCATTCATTCAAGCTGGCCCAAGCAAACCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31213.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis