Browse Element(s) Details


OsAffx.31219.1.S1_at

Description tigr:9639.m02730
TID=OsAffx.31219.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=EF hand, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3018011/11EF hand family protein
LOC_Os12g243201/11Cell Division Protein AAA ATPase family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30140NANA11+17017842..17018672retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30150OsAffx.31780.2.S1_s_at10/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30150OsAffx.31780.2.S1_x_at2/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30150OsAffx.31780.2.S1_at1/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30150OsAffx.31780.1.S1_at1/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30159OsAffx.30217.1.S1_x_at1/1111+17030345..17032190NA
LOC_Os11g30170Os.14919.1.S1_at2/1111+17035369..17041086transposon protein, putative, Mutator sub-class
LOC_Os11g30170OsAffx.29313.1.S1_at1/1111+17035369..17041086transposon protein, putative, Mutator sub-class
LOC_Os11g30180OsAffx.31219.1.S1_at11/1111+17042689..17043009EF hand family protein
LOC_Os11g30190OsAffx.19081.1.S1_at11/1111+17045441..17046100hypothetical protein
LOC_Os11g30200OsAffx.31220.1.S1_at11/1111+17056305..17058410hypothetical protein
LOC_Os11g30210OsAffx.7254.1.S1_at1/1111+17058622..17062453NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005509molecular_functioncalcium ion binding
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31219.1.S1_at--291--4052Chr12:13877921..13878046 (24 bp)
CGAGGCGCTGAACACCAACGGTGAT
LOC_Os12g24320
OsAffx.31219.1.S1_at--898--4571Chr11:17042779..17042803 (25 bp)
GCGCTGAACACCAACGGTGATGGCG
LOC_Os11g30180
OsAffx.31219.1.S1_at--824--7391Chr11:17042795..17042819 (25 bp)
GTGATGGCGTGCTGTCCTGCGCCAA
LOC_Os11g30180
OsAffx.31219.1.S1_at--366--6231Chr11:17042797..17042821 (25 bp)
GATGGCGTGCTGTCCTGCGCCAAGC
LOC_Os11g30180
OsAffx.31219.1.S1_at--1142--8471Chr11:17042799..17042823 (25 bp)
TGGCGTGCTGTCCTGCGCCAAGCTC
LOC_Os11g30180
OsAffx.31219.1.S1_at--166--10771Chr11:17042834..17042858 (25 bp)
TTGAGTCCTTCCTACTCCTCTACGG
LOC_Os11g30180
OsAffx.31219.1.S1_at--312--1511Chr11:17042950..17042974 (25 bp)
AGCAGCGCCGTAGACCGAGCCGAGT
LOC_Os11g30180
OsAffx.31219.1.S1_at--254--5071Chr11:17042951..17042975 (25 bp)
GCAGCGCCGTAGACCGAGCCGAGTT
LOC_Os11g30180
OsAffx.31219.1.S1_at--671--3371Chr11:17042952..17042976 (25 bp)
CAGCGCCGTAGACCGAGCCGAGTTT
LOC_Os11g30180
OsAffx.31219.1.S1_at--287--4551Chr11:17042954..17042978 (25 bp)
GCGCCGTAGACCGAGCCGAGTTTCG
LOC_Os11g30180
OsAffx.31219.1.S1_at--1118--4151Chr11:17042955..17042979 (25 bp)
CGCCGTAGACCGAGCCGAGTTTCGC
LOC_Os11g30180
Target Sequence 
CGAGGCGCTGAACACCAACGGTGATGGCGTGCTGTCCTGCGCCAAGCTCCGCCGCGCGCTTGAGTCCTTCCTACTCCTCT
ACGGCGCCGGCTTCGGCTCCGCCCAGCTGGCCCCGGTCCCCGCCGAGGTCTCCGCCCTCTACGACTCCATCTTCGAGCAG
TTCGACGCCGACCACAGCAGCGCCGTAGACCGAGCCGAGTTTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis