Browse Element(s) Details


OsAffx.31250.1.S1_at

Description tigr:9639.m02876
TID=OsAffx.31250.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3166011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31630OsAffx.19106.1.S1_at10/1111+17993146..17995156hypothetical protein
LOC_Os11g31630Os.38320.2.S1_at1/1111+17993146..17995156hypothetical protein
LOC_Os11g31630OsAffx.16931.1.S1_at1/1111+17993146..17995156hypothetical protein
LOC_Os11g31640Os.7816.1.S1_at11/1111+18000817..18005033Serine palmitoyltransferase 2, putative, expressed
LOC_Os11g31650Os.5713.1.S1_at4/1111+18007057..18009546hypothetical protein
LOC_Os11g31660OsAffx.31250.1.S1_at11/1111+18013325..18018148expressed protein
LOC_Os11g31670NANA11+18020744..18022384hypothetical protein
LOC_Os11g31680Os.21278.1.S1_at11/1111+18023312..18038500retrotransposon protein, putative, unclassified, expressed
LOC_Os11g31680Os.10442.1.S2_at1/1111+18023312..18038500retrotransposon protein, putative, unclassified, expressed
LOC_Os11g31690OsAffx.31252.1.S1_at11/1111+18042435..18047623expressed protein
LOC_Os11g31690OsAffx.2057.1.S1_x_at2/1111+18042435..18047623expressed protein
LOC_Os11g31690OsAffx.2057.1.S1_at2/1111+18042435..18047623expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31250.1.S1_at--201--9251Chr11:18015683..18015707 (25 bp)
TCCTCAAGCTGGCACTAGTTCTAGT
LOC_Os11g31660
OsAffx.31250.1.S1_at--687--10491Chr11:18015701..18015725 (25 bp)
TTCTAGTGGAAGTGCCATACCGCCA
LOC_Os11g31660
OsAffx.31250.1.S1_at--344--4391Chr11:18015722..18015746 (25 bp)
GCCACTTACGATGTTTCCACTAGAA
LOC_Os11g31660
OsAffx.31250.1.S1_at--1138--6271Chr11:18015731..18015755 (25 bp)
GATGTTTCCACTAGAACTTGCCTCT
LOC_Os11g31660
OsAffx.31250.1.S1_at--322--8051Chr11:18015807..18015831 (25 bp)
GGAGATATATCCACGACTAACCATT
LOC_Os11g31660
OsAffx.31250.1.S1_at--1148--6411Chr11:18016490..18016514 (25 bp)
GATCTCAAGAGGCACAACTGGAATT
LOC_Os11g31660
OsAffx.31250.1.S1_at--106--9891Chr11:18016526..18016550 (25 bp)
TACATTTCAACTATCATGGCCGGCC
LOC_Os11g31660
OsAffx.31250.1.S1_at--45--8471Chr11:18016542..18016566 (25 bp)
TGGCCGGCCATAAGCCCAATACTGA
LOC_Os11g31660
OsAffx.31250.1.S1_at--550--2911Chr11:18017583..18017606 (24 bp)
AAGGATTGTATCACCAAGCTTGGAC
LOC_Os11g31660
OsAffx.31250.1.S1_at--500--2431Chr11:18017624..18017648 (25 bp)
AAAAGTTTGTTGAGCTCCGTCATGC
LOC_Os11g31660
OsAffx.31250.1.S1_at--906--5891Chr11:18017635..18017659 (25 bp)
GAGCTCCGTCATGCTTCTAAGAAAT
LOC_Os11g31660
Target Sequence 
TCCTCAAGCTGGCACTAGTTCTAGTGGAAGTGCCATACCGCCACTTACGATGTTTCCACTAGAACTTGCCTCTCACAAAA
TTTTATATGAGAAGATTCCAACAGGAGAATACAAGATTTTTCTTGGAGATATATCCACGACTAACCATTGGCCAAAAACA
ATGAAAAAGAACTTTTCAGTTGAAGATCTCAAGAGGCACAACTGGAATTGCCTGGGAAAATACATTTCAACTATCATGGC
CGGCCATAAGCCCAATACTGAATTGATACATCTTGTAGATGTCCTGATAAAGGATTGTATCACCAAGCTTGGACTTAACT
ACAACGAAGCTAAAAGTTTGTTGAGCTCCGTCATGCTTCTAAGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis