Browse Element(s) Details


OsAffx.31318.1.S1_at

Description tigr:9639.m03242
TID=OsAffx.31318.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3601010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35970Os.51646.1.S1_at11/1111+20634360..20640655expressed protein
LOC_Os11g35980Os.52205.1.S1_at10/1111+20644445..20647550Leucine Rich Repeat family protein, expressed
LOC_Os11g35990OsAffx.22452.1.S1_x_at1/1111+20649277..20650409NA
LOC_Os11g36000Os.52228.1.S1_at11/1111+20655461..20657747Leucine Rich Repeat family protein, expressed
LOC_Os11g36000OsAffx.31317.1.S1_at2/1111+20655461..20657747Leucine Rich Repeat family protein, expressed
LOC_Os11g36010OsAffx.31318.1.S1_at10/1111+20661639..20664280hypothetical protein
LOC_Os11g36020OsAffx.7308.1.S1_at11/1111+20674402..20676339Leucine Rich Repeat family protein
LOC_Os11g36030Os.18023.1.S1_at11/1111+20677193..20680968AT hook motif family protein, expressed
LOC_Os11g36050Os.18652.1.S1_at11/1111+20684202..20686422KE2 family protein, expressed
LOC_Os11g36060Os.27270.2.S1_at11/1111+20686991..20696655THUMP domain containing protein, expressed
LOC_Os11g36060Os.27270.1.S1_at10/1111+20686991..20696655THUMP domain containing protein, expressed
LOC_Os11g36060OsAffx.16487.1.S1_at1/1111+20686991..20696655THUMP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31318.1.S1_at--448--7791Chr11:20661814..20661838 (25 bp)
GGTCCCCTTTGTTGCGAGTTGCCAT
LOC_Os11g36010
OsAffx.31318.1.S1_at--621--10771Chr11:20661822..20661846 (25 bp)
TTGTTGCGAGTTGCCATCCCCGCGT
LOC_Os11g36010
OsAffx.31318.1.S1_at--897--7473Chr11:20661876..20661900 (25 bp)
GTGTGGTTCGGTTGCATGCACATGC
LOC_Os11g36010
OsAffx.31318.1.S1_at--140--4991Chr11:20661889..20661913 (25 bp)
GCATGCACATGCACTTGATTCCCAT
LOC_Os11g36010
OsAffx.31318.1.S1_at--7--10793Chr11:20661903..20661923 (21 bp)
TTGATTCCCATCCTGCGAGTGACAC
LOC_Os11g36010
OsAffx.31318.1.S1_at--893--9131NONE
TGCGAGTGACACCTGCCGCTGCTAT
NONE
OsAffx.31318.1.S1_at--771--551Chr11:20663293..20663317 (25 bp)
ATCCTTACAGCCACGCAGTGGTGGA
LOC_Os11g36010
OsAffx.31318.1.S1_at--977--1091Chr11:20663309..20663333 (25 bp)
AGTGGTGGACACTCATCGACGGCGC
LOC_Os11g36010
OsAffx.31318.1.S1_at--577--4551Chr11:20663330..20663354 (25 bp)
GCGCGGAAGGGATCGCCTCCTTTCA
LOC_Os11g36010
OsAffx.31318.1.S1_at--509--9251Chr11:20663347..20663371 (25 bp)
TCCTTTCACGGTGCTGATGGTTGGG
LOC_Os11g36010
OsAffx.31318.1.S1_at--105--7631Chr11:20663375..20663399 (25 bp)
GGGAAACACTCCATATCACAATTCT
LOC_Os11g36010
Target Sequence 
GGTCCCCTTTGTTGCGAGTTGCCATCCCCGCGTCGACAGCGGCCGAAGCGGTTTCCGGCCCCGTGTGGTTCGGTTGCATG
CACATGCACTTGATTCCCATCCTGCGAGTGACACCTGCCGCTGCTATCCTTACAGCCACGCAGTGGTGGACACTCATCGA
CGGCGCGGAAGGGATCGCCTCCTTTCACGGTGCTGATGGTTGGGGATGGGAAACACTCCATATCACAATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis