Browse Element(s) Details


OsAffx.31349.1.S1_x_at

Description tigr:9639.m03407
TID=OsAffx.31349.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3763011/11hypothetical protein
LOC_Os06g161508/11hypothetical protein
LOC_Os06g161606/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37580OsAffx.31347.2.S1_at11/1111+21685141..21686361hypothetical protein
LOC_Os11g37590NANA11+21688410..21691504transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37600NANA11+21694010..21696875transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37610OsAffx.7328.3.S1_at9/1111+21698087..21701323hypothetical protein
LOC_Os11g37610OsAffx.7328.2.S1_at1/1111+21698087..21701323hypothetical protein
LOC_Os11g37620OsAffx.31348.1.S1_at11/1111+21702411..21703353hypothetical protein
LOC_Os11g37630OsAffx.31349.1.S1_x_at11/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.31349.2.S1_x_at10/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.15454.1.S1_x_at1/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.15454.2.S1_x_at1/1111+21706956..21711324hypothetical protein
LOC_Os11g37640Os.11161.1.S1_at11/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640OsAffx.19219.1.S1_at10/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640Os.39305.1.A1_at1/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640Os.39305.1.A1_x_at1/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37650OsAffx.19220.1.S1_at9/1111+21720431..21725273hypothetical protein
LOC_Os11g37660OsAffx.7329.1.S1_at11/1111+21727528..21729717pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31349.1.S1_x_at--227--7173Chr11:21707495..21707519 (25 bp)
GTCTCCGCCGGGAGCTGGTTCTACC
LOC_Os11g37630
OsAffx.31349.1.S1_x_at--258--7631Chr11:21707486..21707510 (25 bp)
GGGAGCTGGTTCTACCGGCCGTCAA
LOC_Os11g37630
OsAffx.31349.1.S1_x_at--402--9471Chr11:21707476..21707500 (25 bp)
TCTACCGGCCGTCAATGTTCTACGA
LOC_Os11g37630
OsAffx.31349.1.S1_x_at--435--7071Chr11:21707466..21707490 (25 bp)
GTCAATGTTCTACGACCGCCGCGGC
LOC_Os11g37630
OsAffx.31349.1.S1_x_at--307--9273Chr11:21707389..21707413 (25 bp)
TCCGTTACTCCCTCCGGATGGCGTT
LOC_Os11g37630
OsAffx.31349.1.S1_x_at--773--7393Chr11:21707294..21707318 (25 bp)
GTGATCGTGCGGACGATCTCGCCGT
LOC_Os11g37630
OsAffx.31349.1.S1_x_at--551--9333Chr11:21707276..21707300 (25 bp)
TCGCCGTCGCACTACGAGAACGGGA
LOC_Os11g37630
OsAffx.31349.1.S1_x_at--420--4712Chr11:21707211..21707235 (25 bp)
GCGGCGCGGCGAGTGGGAGCTGAAC
LOC_Os11g37630
OsAffx.31349.1.S1_x_at--745--5892Chr11:21707195..21707219 (25 bp)
GAGCTGAACGCCATGGAGAAGGACA
LOC_Os11g37630
OsAffx.31349.1.S1_x_at--419--1473Chr11:21707179..21707203 (25 bp)
AGAAGGACATGCACCGGATACAGGT
LOC_Os11g37630
OsAffx.31349.1.S1_x_at--366--8653Chr11:21707038..21707062 (25 bp)
TGTGGCAGCCGGACAAGTTCAAGGT
LOC_Os11g37630
Target Sequence 
GTCTCCGCCGGGAGCTGGTTCTACCGGCCGTCAATGTTCTACGACCGCCGCGGCCGCCTCGTCGGCTGCAACACCTGCCT
GTCCCCGAACGTCACCGACCTCACCCTCCGTTACTCCCTCCGGATGGCGTTCCGGAGCGCGCTCCGGGCGGCGNNNACGG
GNNNCGCGCGCCGCCGCGGCGGGCGCGNCGCGAGGANNNCGGTGATCGTGCGGACGATCTCGCCGTCGCACTACGAGAAC
GGGACGTGGAACGGGNACGGGGACTGCNTCCGGANGNGGCCGGCGCGGCGCGGCGAGTGGGAGCTGAACGCCATGGAGAA
GGACATGCACCGGATACAGGTNGAGGAGTTCGCGGCGGCGGCGNNNNNNNNNNNNNNNNNNNNNAGGAAGAGGGGGAAAG
NGGCGGCGAGGATGNTGCTGATGGACGCGACGGAGGCCATGGCGCAGCGGCCGGACGCCCACCCGAGCAAGNACAGGCTG
TGGCAGCCGGACAAGTTCAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31349.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis