Browse Element(s) Details


OsAffx.31379.1.S1_at

Description tigr:9639.m03556
TID=OsAffx.31379.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3907011/11hypothetical protein
LOC_Os08g191801/11Transposable element protein, putative, MuDR
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39020Os.10975.1.S1_at11/1111+22728789..22732754ABC transporter family protein, expressed
LOC_Os11g39020OsAffx.14733.1.S1_at1/1111+22728789..22732754ABC transporter family protein, expressed
LOC_Os11g39030OsAffx.27387.3.S1_at11/1111+22734713..22735960RNA recognition motif family protein
LOC_Os11g39040OsAffx.19244.1.S1_at10/1111+22744733..22747620hypothetical protein
LOC_Os11g39050OsAffx.31377.1.S1_at11/1111+22748623..22749192hypothetical protein
LOC_Os11g39060OsAffx.31378.1.S1_x_at11/1111+22751541..22751948hypothetical protein
LOC_Os11g39060OsAffx.31378.1.S1_at11/1111+22751541..22751948hypothetical protein
LOC_Os11g39070OsAffx.31379.1.S1_at11/1111+22754463..22754933hypothetical protein
LOC_Os11g39079NANA11+22759453..22761440hypothetical protein
LOC_Os11g39090OsAffx.19244.2.S1_at11/1111+22761721..22762278hypothetical protein
LOC_Os11g39100OsAffx.7350.1.S1_at11/1111+22770181..22770783hypothetical protein
LOC_Os11g39110OsAffx.31380.1.S1_at11/1111+22773401..22773700hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31379.1.S1_at--409--1871Chr11:22754809..22754833 (25 bp)
ACGAGAAGAAGCCTCCCGCCGGCAA
LOC_Os11g39070
OsAffx.31379.1.S1_at--118--5171Chr11:22754788..22754812 (25 bp)
GCAAGGTGCCGATGCCCGACGACTA
LOC_Os11g39070
OsAffx.31379.1.S1_at--130--4111Chr11:22754731..22754755 (25 bp)
CGCCGCCAAAACCTGAGTACCTGAG
LOC_Os11g39070
OsAffx.31379.1.S1_at--479--2431Chr11:22754724..22754748 (25 bp)
AAAACCTGAGTACCTGAGCCTCCTC
LOC_Os11g39070
OsAffx.31379.1.S1_at--735--1271Chr11:22754617..22754641 (25 bp)
AGATCCTCGCCGGACTCAGGAAGGA
LOC_Os11g39070
OsAffx.31379.1.S1_at--105--5712Chr08:11465121..11465295 (25 bp)
GACTCAGGAAGGACGGCTACTACCT
LOC_Os08g19180
OsAffx.31379.1.S1_at--413--1751Chr11:22754584..22754608 (25 bp)
ACCTCGTCGACGAGAGTTTCCTCGA
LOC_Os11g39070
OsAffx.31379.1.S1_at--696--1871Chr11:22754575..22754599 (25 bp)
ACGAGAGTTTCCTCGAGAAGTCGGC
LOC_Os11g39070
OsAffx.31379.1.S1_at--953--611Chr11:22754546..22754570 (25 bp)
ATGCGGGCTTACGTGAGTGAAGAAT
LOC_Os11g39070
OsAffx.31379.1.S1_at--906--4691Chr11:22754497..22754521 (25 bp)
GCGGCATCATCTTCGGCTACTGGGA
LOC_Os11g39070
OsAffx.31379.1.S1_at--104--3551Chr11:22754493..22754517 (25 bp)
CATCATCTTCGGCTACTGGGACTAC
LOC_Os11g39070
Target Sequence 
ACGAGAAGAAGCCTCCCGCCGGCAAGGTGCCGATGCCCGACGACTACATCGCCACCATCCTGTCGCTGAAGAGGGAGCCG
CCGCCAAAACCTGAGTACCTGAGCCTCCTCTCGCCGGAGGAGCGCGAGAAGCAGCTGGAGTTCGACGCCGTCTGCGCGAA
GGAGGACGACGCGCTGGAGGAGCTGCAGGCCAAGATCCTCGCCGGACTCAGGAAGGACGGCTACTACCTCGTCGACGAGA
GTTTCCTCGAGAAGTCGGCGGCGATGCGGGCTTACGTGAGTGAAGAATGGGCCAAGATGGACTGGGCAGGCAGCGGCATC
ATCTTCGGCTACTGGGACTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis