Browse Element(s) Details


OsAffx.31457.1.S1_at

Description tigr:9639.m04020
TID=OsAffx.31457.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4348011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43430Os.14491.2.S1_x_at1/1111+25718811..25723864transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43430Os.47463.1.S1_x_at1/1111+25718811..25723864transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43440NANA11+25727431..25728051hypothetical protein
LOC_Os11g43450NANA11+25729552..25732285transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43460OsAffx.447.1.S1_at7/1111+25735696..25740238retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43460Os.52609.1.S1_at2/1111+25735696..25740238retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43460OsAffx.22947.2.S1_x_at1/1111+25735696..25740238retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43470NANA11+25743286..25744374transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43480OsAffx.31457.1.S1_at11/1111+25747182..25750328hypothetical protein
LOC_Os11g43490NANA11+25751955..25752653hypothetical protein
LOC_Os11g43500OsAffx.31458.1.S1_at11/1111+25753361..25754635Leucine Rich Repeat family protein
LOC_Os11g43510Os.33665.1.S1_at11/1111+25756948..25760360Lipase family protein, expressed
LOC_Os11g43520Os.55402.1.S1_at11/1111+25763193..25763800Glutaredoxin-like family protein, expressed
LOC_Os11g43530NANA11+25769029..25769358Glutaredoxin-like family protein
LOC_Os11g43540OsAffx.8954.1.S1_x_at2/1111+25772597..25773822hypothetical protein
LOC_Os11g43540OsAffx.26507.1.S1_x_at1/1111+25772597..25773822hypothetical protein
LOC_Os11g43540Os.53905.1.S1_at1/1111+25772597..25773822hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31457.1.S1_at--122--391Chr11:25749731..25749755 (25 bp)
ATCACTGTCCATCCGAATGAAGCCG
LOC_Os11g43480
OsAffx.31457.1.S1_at--588--7571Chr11:25749767..25749791 (25 bp)
GGGCTCCACGGAGGCAGTCCTAATG
LOC_Os11g43480
OsAffx.31457.1.S1_at--307--6011Chr11:25749810..25749834 (25 bp)
GAGAGCTTGCGCATCTGTGGCGTCA
LOC_Os11g43480
OsAffx.31457.1.S1_at--138--8371Chr11:25749984..25750008 (25 bp)
GGCGGTCTCACCTTCAGTAGTGACA
LOC_Os11g43480
OsAffx.31457.1.S1_at--531--8111Chr11:25750040..25750064 (25 bp)
GGACGACATGCTAGTGACCATCACC
LOC_Os11g43480
OsAffx.31457.1.S1_at--849--8511Chr11:25750073..25750097 (25 bp)
TGGAACAGCACCCAAACTTGCCAAG
LOC_Os11g43480
OsAffx.31457.1.S1_at--505--2811Chr11:25750095..25750119 (25 bp)
AAGATCATCTGGTCATTCCAACGGA
LOC_Os11g43480
OsAffx.31457.1.S1_at--129--531Chr11:25750164..25750188 (25 bp)
ATCGAGCTCAACCTGCTGGCAGGAA
LOC_Os11g43480
OsAffx.31457.1.S1_at--549--811Chr11:25750189..25750213 (25 bp)
ATGGTGCCACGGATGATTATCCTCA
LOC_Os11g43480
OsAffx.31457.1.S1_at--699--6391Chr11:25750226..25750250 (25 bp)
GATCAAGGAGCATCCCGGTAAGCCT
LOC_Os11g43480
OsAffx.31457.1.S1_at--655--7831Chr11:25750242..25750266 (25 bp)
GGTAAGCCTGTACTTGTTTGCCAAC
LOC_Os11g43480
Target Sequence 
ATCACTGTCCATCCGAATGAAGCCGGTCAGCAGTTGGGGCTCCACGGAGGCAGTCCTAATGACACCTCCATTGCTGCTCG
AGAGCTTGCGCATCTGTGGCGTCAGAGACTGGCTGCCCCGCCGGATGAAAGAGCTCAACAACCTCTCCAAGCTAACCCTC
CGAGACACTCTCCTAAACGAGGACAACCTCGCTGTCCTCGGTGCGCTCAAGGGCCTGCGTTGTCTCAGGCTCCGCTACCA
CTCCTTCGACTCTGGCGGTCTCACCTTCAGTAGTGACACCTTCCCCAACCTCGTAGGTTTGGTCATCGAGGACGACATGC
TAGTGACCATCACCTTTGCTCCTGGAACAGCACCCAAACTTGCCAAGATCATCTGGTCATTCCAACGGATGGAGTCCCTA
ACAGGAATTAAGAACCTTCAGAGCTTGAGACGCATCGAGCTCAACCTGCTGGCAGGAAATGGTGCCACGGATGATTATCC
TCAGTTGAAGCAAGAGATCAAGGAGCATCCCGGTAAGCCTGTACTTGTTTGCCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis