Browse Element(s) Details


OsAffx.31458.1.S1_at

Description tigr:9639.m04022
TID=OsAffx.31458.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4350011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43450NANA11+25729552..25732285transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43460OsAffx.447.1.S1_at7/1111+25735696..25740238retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43460Os.52609.1.S1_at2/1111+25735696..25740238retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43460OsAffx.22947.2.S1_x_at1/1111+25735696..25740238retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43470NANA11+25743286..25744374transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43480OsAffx.31457.1.S1_at11/1111+25747182..25750328hypothetical protein
LOC_Os11g43490NANA11+25751955..25752653hypothetical protein
LOC_Os11g43500OsAffx.31458.1.S1_at11/1111+25753361..25754635Leucine Rich Repeat family protein
LOC_Os11g43510Os.33665.1.S1_at11/1111+25756948..25760360Lipase family protein, expressed
LOC_Os11g43520Os.55402.1.S1_at11/1111+25763193..25763800Glutaredoxin-like family protein, expressed
LOC_Os11g43530NANA11+25769029..25769358Glutaredoxin-like family protein
LOC_Os11g43540OsAffx.8954.1.S1_x_at2/1111+25772597..25773822hypothetical protein
LOC_Os11g43540OsAffx.26507.1.S1_x_at1/1111+25772597..25773822hypothetical protein
LOC_Os11g43540Os.53905.1.S1_at1/1111+25772597..25773822hypothetical protein
LOC_Os11g43550NANA11+25778360..25778689Glutaredoxin-like family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31458.1.S1_at--1009--9811Chr11:25753856..25753880 (25 bp)
TAAACTGGCTACCTTGGTATCCCCT
LOC_Os11g43500
OsAffx.31458.1.S1_at--90--2531Chr11:25753827..25753851 (25 bp)
AACTTCTTCAGAGCCTTAACATCAG
LOC_Os11g43500
OsAffx.31458.1.S1_at--142--1631Chr11:25753804..25753828 (25 bp)
AGCGGCATCACAAGTGGGCTTCCAG
LOC_Os11g43500
OsAffx.31458.1.S1_at--31--3431Chr11:25753782..25753806 (25 bp)
CAGACTGGATCACTGAGCTCGACCA
LOC_Os11g43500
OsAffx.31458.1.S1_at--583--2051Chr11:25753694..25753718 (25 bp)
ACTTAGAATTCTACGCTGCCTGAGG
LOC_Os11g43500
OsAffx.31458.1.S1_at--1130--8871Chr11:25753674..25753698 (25 bp)
TGAGGCTTCGGCACAAGTCTTACAC
LOC_Os11g43500
OsAffx.31458.1.S1_at--98--10491Chr11:25753655..25753679 (25 bp)
TTACACTGGAACCAAGCTCACCTTT
LOC_Os11g43500
OsAffx.31458.1.S1_at--603--8191Chr11:25753625..25753649 (25 bp)
GGAAGAATTCCACCATCTCAAGTCT
LOC_Os11g43500
OsAffx.31458.1.S1_at--692--7151Chr11:25753604..25753628 (25 bp)
GTCTCTGCTTGTTGATGGCTGCGAC
LOC_Os11g43500
OsAffx.31458.1.S1_at--320--7811Chr11:25753521..25753545 (25 bp)
GGTCTTTTGACTCCATTGATGCCCT
LOC_Os11g43500
OsAffx.31458.1.S1_at--724--7271Chr11:25753392..25753416 (25 bp)
GTCCAGTTTTCAAGCACAATTCAAG
LOC_Os11g43500
Target Sequence 
TAAACTGGCTACCTTGGTATCCCCTCCAAAACTTCTTCAGAGCCTTAACATCAGCGGCATCACAAGTGGGCTTCCAGACT
GGATCACTGAGCTCGACCAACTCACCAAGATCACACTGAGCAATACTTACTTGGGAGAAGATGCAATCCGAGTATTCGGA
AAACTTAGAATTCTACGCTGCCTGAGGCTTCGGCACAAGTCTTACACTGGAACCAAGCTCACCTTTAACACGGAAGAATT
CCACCATCTCAAGTCTCTGCTTGTTGATGGCTGCGACATCACCAACATTGACTTTGTCAACATCGGGGCGGCTCCTAAGC
TCGAGATGATTATCTGGTCTTTTGACTCCATTGATGCCCTTCCACTCTCAGGGATTGAACACCTCCCCAAGCTGAAGAAG
CTAGAGCTCAATGGAGACGGAGACATGGCTGCGATGAGACGAATCAGGGATGCACATCCCAACTGTCCAGTTTTCAAGCA
CAATTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis