Browse Element(s) Details


OsAffx.31510.1.S1_at

Description tigr:9639.m04325
TID=OsAffx.31510.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1196010/11hypothetical protein
LOC_Os05g314003/11retrotransposon protein, putative, unclassified
LOC_Os10g316103/11hypothetical protein
LOC_Os03g433091/11hypothetical protein
LOC_Os04g162601/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11940OsAffx.1646.1.S1_x_at1/119+6720117..6725646retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g11940OsAffx.22368.1.S1_x_at1/119+6720117..6725646retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g11950NANA9+6726667..6729490retrotransposon protein, putative, unclassified
LOC_Os09g11960OsAffx.31510.1.S1_at10/119+6739823..6740854hypothetical protein
LOC_Os09g11970OsAffx.31509.1.S1_at11/119+6744873..6745376hypothetical protein
LOC_Os09g11980Os.46785.2.S1_x_at3/119+6750460..6753563retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g11980OsAffx.30226.2.S1_x_at2/119+6750460..6753563retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g11980OsAffx.442.1.S1_x_at1/119+6750460..6753563retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g11990OsAffx.19404.1.S1_at11/119+6755705..6756136hypothetical protein
LOC_Os09g12000OsAffx.7428.1.S1_at9/119+6758298..6759348hypothetical protein
LOC_Os09g12010OsAffx.7427.1.S1_at10/119+6760762..6762437hypothetical protein
LOC_Os09g12010OsAffx.19675.1.S1_at1/119+6760762..6762437hypothetical protein
LOC_Os09g12010OsAffx.19675.1.S1_x_at1/119+6760762..6762437hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31510.1.S1_at--810--2731Chr09:6739907..6739931 (25 bp)
AAGAATGAACCACCTAAACTAGCTG
LOC_Os09g11960
OsAffx.31510.1.S1_at--541--5431Chr09:6739913..6739937 (25 bp)
GAACCACCTAAACTAGCTGAACAGA
LOC_Os09g11960
OsAffx.31510.1.S1_at--816--5491Chr09:6739931..6739955 (25 bp)
GAACAGAGCGTTTCAGAGCGTTTCA
LOC_Os09g11960
OsAffx.31510.1.S1_at--1136--4631NONE
GCGTTTCAGGATTTATGAGGAACAA
NONE
OsAffx.31510.1.S1_at--92--951Chr09:6740661..6740685 (25 bp)
AGGAACAAATGATGCTACTCAATGT
LOC_Os09g11960
OsAffx.31510.1.S1_at--21--6351Chr09:6740671..6740695 (25 bp)
GATGCTACTCAATGTTTGCTCGTTT
LOC_Os09g11960
OsAffx.31510.1.S1_at--686--6851Chr09:6740684..6740708 (25 bp)
GTTTGCTCGTTTGCTATTTCTTCAT
LOC_Os09g11960
OsAffx.31510.1.S1_at--287--4813Chr10:16234757..16234777 (21 bp)
GCTCGTTTGCTATTTCTTCATGTGA
LOC_Os10g31610
OsAffx.31510.1.S1_at--87--9093Chr10:16234760..16234784 (25 bp)
TGCTATTTCTTCATGTGATCTCTCC
LOC_Os10g31610
OsAffx.31510.1.S1_at--894--3795Chr12:5874719..5874768 (25 bp)
CTCCTATGACGACAATTGCAACAAG
NONE
OsAffx.31510.1.S1_at--519--4174Chr12:5874750..5874771 (22 bp)
CCGAGGACGGTTTCCAGACAAGAAG
NONE
Target Sequence 
AAGAATGAACCACCTAAACTAGCTGAACAGAGCGTTTCAGAGCGTTTCAGGATTTATGAGGAACAAATGATGCTACTCAA
TGTTTGCTCGTTTGCTATTTCTTCATGTGATCTCTCCTATGACGACAATTGCAACAAGAAACCGAGGACGGTTTCCAGAC
AAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis