Browse Element(s) Details


OsAffx.31539.2.S1_at

Description tigr:9639.m00041
TID=OsAffx.31539.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ammonium Transporter Family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0141011/11Ammonium transporter 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01370OsAffx.18618.1.S1_at10/1111+226459..230596expressed protein
LOC_Os11g01370Os.8201.1.S1_x_at4/1111+226459..230596expressed protein
LOC_Os11g01380OsAffx.18617.1.S1_at11/1111+233285..243450Clathrin heavy chain, putative, expressed
LOC_Os11g01380Os.5886.1.S1_at8/1111+233285..243450Clathrin heavy chain, putative, expressed
LOC_Os11g01390OsAffx.19445.1.S1_at11/1111+244190..244639EF hand family protein
LOC_Os11g01400OsAffx.31538.2.S1_x_at11/1111+246082..249718hypothetical protein
LOC_Os11g01400OsAffx.31538.2.S1_at10/1111+246082..249718hypothetical protein
LOC_Os11g01400OsAffx.21149.1.S1_x_at1/1111+246082..249718hypothetical protein
LOC_Os11g01410OsAffx.31539.2.S1_at11/1111+249808..250788Ammonium transporter 2, putative
LOC_Os11g01420Os.9537.1.S1_at11/1111+251429..253891ribosomal protein L10 containing protein, expressed
LOC_Os11g01420Os.9537.1.S1_s_at11/1111+251429..253891ribosomal protein L10 containing protein, expressed
LOC_Os11g01420Os.24578.1.A1_at1/1111+251429..253891ribosomal protein L10 containing protein, expressed
LOC_Os11g01430OsAffx.18620.1.S1_at11/1111+254163..255783hypothetical protein
LOC_Os11g01430Os.23748.1.A1_at6/1111+254163..255783hypothetical protein
LOC_Os11g01450NANA11+261625..263495phosphatidate cytidylyltransferase family protein, expressed
LOC_Os11g01460Os.52782.1.S1_at1/1111+268028..270933hypothetical protein
LOC_Os11g01470NANA11+271765..279565retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0015696biological_processammonium transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0008519molecular_functionammonium transporter activity
GO:0015398molecular_functionhigh affinity ammonium transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31539.2.S1_at--1130--5131Chr11:250107..250131 (25 bp)
GCAACGGCGAGTGGTGGCAACCTGG
LOC_Os11g01410
OsAffx.31539.2.S1_at--1103--8411Chr11:249876..249900 (25 bp)
GGCCTGGTGTGCATCACTCCAAGGT
LOC_Os11g01410
OsAffx.31539.2.S1_at--851--3891Chr11:249873..249897 (25 bp)
CTGGTGTGCATCACTCCAAGGTCAA
LOC_Os11g01410
OsAffx.31539.2.S1_at--221--7751Chr11:249871..249895 (25 bp)
GGTGTGCATCACTCCAAGGTCAAAC
LOC_Os11g01410
OsAffx.31539.2.S1_at--527--7331Chr11:249868..249892 (25 bp)
GTGCATCACTCCAAGGTCAAACATC
LOC_Os11g01410
OsAffx.31539.2.S1_at--323--392Chr12:264256..264402 (25 bp)
ATCACTCCAAGGTCAAACATCAAGT
NONE
OsAffx.31539.2.S1_at--946--2872Chr12:264248..264272 (25 bp)
AAGGTCAAACATCAAGTACAGCTTT
NONE
OsAffx.31539.2.S1_at--208--2512Chr12:264241..264265 (25 bp)
AACATCAAGTACAGCTTTCTTCTAG
NONE
OsAffx.31539.2.S1_at--288--9732Chr12:264237..264261 (25 bp)
TCAAGTACAGCTTTCTTCTAGTAGT
NONE
OsAffx.31539.2.S1_at--662--1172Chr12:264234..264258 (25 bp)
AGTACAGCTTTCTTCTAGTAGTAAT
NONE
OsAffx.31539.2.S1_at--185--3392Chr12:264230..264254 (25 bp)
CAGCTTTCTTCTAGTAGTAATTTCT
NONE
Target Sequence 
GCAACGGCGAGTGGTGGCAACCTGGTGGTGATGGTGGCCGGCGCGGGCATCCTGTGGATGGGGTGGACCGGCTTCAACGG
CGGCGACCCCTTCTCCGCCAACACCGACTCGTCGGTGGCGGTGCTCAACACGCACATCTGCGCCACCACCAGCATCGTCG
CTTGGGTTTGCTGCGACGTCGCCGTCCGCGGGAGGCCGTCGGTGGTGGGCGCGGTGCAGGGCATGATCACCGGCCTGGTG
TGCATCACTCCAAGGTCAAACATCAAGTACAGCTTTCTTCTAGTAGTAATTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31539.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis