Browse Element(s) Details


OsAffx.31554.1.S1_at

Description tigr:9640.m00161
TID=OsAffx.31554.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g025609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02510Os.53907.1.S1_at4/1112+855275..856433hypothetical protein
LOC_Os12g02520Os.25109.1.S1_at7/1112+857268..859498expressed protein
LOC_Os12g02530Os.12110.1.S1_at11/1112+860146..862519RPT2, putative, expressed
LOC_Os12g02540Os.14454.1.A1_at11/1112+863792..868553transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g02540Os.56849.1.S1_at1/1112+863792..868553transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g02540OsAffx.28871.1.S1_at1/1112+863792..868553transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g02550Os.17196.1.A1_s_at11/1112+875293..876652expressed protein
LOC_Os12g02550Os.50540.1.S1_at2/1112+875293..876652expressed protein
LOC_Os12g02560OsAffx.31554.1.S1_at9/1112+880780..882971hypothetical protein
LOC_Os12g02560OsAffx.31656.2.S1_at3/1112+880780..882971hypothetical protein
LOC_Os12g02570Os.28346.1.S1_x_at1/1112+886161..889817expressed protein
LOC_Os12g02589OsAffx.7463.1.S1_at11/1112+890788..897434hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g02589Os.10374.2.S1_at11/1112+890788..897434hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g02589Os.10374.1.S1_at11/1112+890788..897434hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g02610NANA12+898490..899104hypothetical protein
LOC_Os12g02620Os.10542.1.S1_at11/1112+905322..907654Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g02620Os.10542.1.S1_s_at11/1112+905322..907654Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g02660Os.10542.2.S1_at11/1112+905832..926897expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31554.1.S1_at--734--2891Chr12:880823..880847 (25 bp)
AAGGTAGTGATGAAGCCGGCTCAAG
LOC_Os12g02560
OsAffx.31554.1.S1_at--334--2611NONE
AACGCCGGGCAATCTACTGCATGAA
NONE
OsAffx.31554.1.S1_at--516--10131Chr12:881784..881805 (22 bp)
TATACCTGGTCCTGGTCCAAGGCGC
LOC_Os12g02560
OsAffx.31554.1.S1_at--405--7791NONE
GGTCCAAGGCGCTACAAGCTGCAGA
NONE
OsAffx.31554.1.S1_at--890--6691Chr12:882353..882618 (25 bp)
GTTCCATTTCACCATGTATTATCAT
LOC_Os12g02560
OsAffx.31554.1.S1_at--517--3372Chr12:882362..882669 (25 bp)
CACCATGTATTATCATTGGGCATTA
LOC_Os12g02560
OsAffx.31554.1.S1_at--577--4931Chr12:882664..882688 (25 bp)
GCATTAAATAGGTGCCGCTCAATTA
LOC_Os12g02560
OsAffx.31554.1.S1_at--1090--251Chr12:882671..882695 (25 bp)
ATAGGTGCCGCTCAATTATTTTTCC
LOC_Os12g02560
OsAffx.31554.1.S1_at--916--172Chr12:882688..882712 (25 bp)
ATTTTTCCTGACAATTCCTACATGA
LOC_Os12g02560
OsAffx.31554.1.S1_at--292--9252Chr12:882703..882727 (25 bp)
TCCTACATGATATCTATTCACGATG
LOC_Os12g02560
OsAffx.31554.1.S1_at--226--2832Chr12:882895..882918 (24 bp)
AAGTTCAGCACTCTGAAGAACCGGA
LOC_Os12g02560
Target Sequence 
AAGGTAGTGATGAAGCCGGCTCAAGAAGGCCCAAAACGCCGGGCAATCTACTGCATGAACACACTGGTAGCAGTTGTACG
TATATACCTGGTCCTGGTCCAAGGCGCTACAAGCTGCAGAGGTTCCATTTCACCATGTATTATCATTGGGCATTAAATAG
GTGCCGCTCAATTATTTTTCCTGACAATTCCTACATGATATCTATTCACGATGACAAAATAGAGAAGTTCAGCACTCTGA
AGAACCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis