Browse Element(s) Details


OsAffx.31564.1.S1_at

Description tigr:9639.m00269
TID=OsAffx.31564.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0361011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03560OsAffx.31563.1.S1_at11/1111+1379713..1380036hypothetical protein
LOC_Os11g03570Os.27524.1.S1_at10/1111+1380840..1388477expressed protein
LOC_Os11g03570Os.27524.2.S1_x_at5/1111+1380840..1388477expressed protein
LOC_Os11g03580Os.50919.1.S1_at11/1111+1389587..1390713expressed protein
LOC_Os11g03590Os.50942.1.S1_at11/1111+1391724..1393980Nse1 non-SMC component of SMC5-6 complex family protein, expressed
LOC_Os11g03590Os.54382.1.S1_at1/1111+1391724..1393980Nse1 non-SMC component of SMC5-6 complex family protein, expressed
LOC_Os11g03600Os.50598.1.S1_at1/1111+1396448..1397278Harpin-induced protein 1 containing protein, expressed
LOC_Os11g03610OsAffx.31564.1.S1_at11/1111+1401004..1404134F-box domain containing protein, expressed
LOC_Os11g03610OsAffx.31564.2.S1_at9/1111+1401004..1404134F-box domain containing protein, expressed
LOC_Os11g03620Os.52316.1.S1_at10/1111+1404321..1406005expressed protein
LOC_Os11g03620Os.57024.1.S1_at1/1111+1404321..1406005expressed protein
LOC_Os11g03630Os.6369.1.S1_at6/1111+1407946..1409169hypothetical protein
LOC_Os11g03640OsAffx.30800.2.S1_at11/1111+1410111..1412555expressed protein
LOC_Os11g03640OsAffx.30800.2.S1_x_at11/1111+1410111..1412555expressed protein
LOC_Os11g03650OsAffx.30801.1.S1_at11/1111+1415437..1420233NB-ARC domain containing protein, expressed
LOC_Os11g03650Os.52686.1.S1_at1/1111+1415437..1420233NB-ARC domain containing protein, expressed
LOC_Os11g03660NANA11+1424901..1425915VQ motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31564.1.S1_at--781--7171Chr11:1402162..1402186 (25 bp)
GTCTGGATTTACACAATCACCTCTC
LOC_Os11g03610
OsAffx.31564.1.S1_at--689--391Chr11:1402147..1402171 (25 bp)
ATCACCTCTCAAGTTCACTCAATTG
LOC_Os11g03610
OsAffx.31564.1.S1_at--925--5591Chr11:1402076..1402100 (25 bp)
GAAATTCAGTCTTCCAGTTGACTAA
LOC_Os11g03610
OsAffx.31564.1.S1_at--495--5712Chr12:1314530..1314549 (20 bp)
GACTAATCTTTTCGTAGCAGCTCCA
NONE
OsAffx.31564.1.S1_at--372--52Chr12:1312471..1312495 (25 bp)
ATTGTAGCTTGAACAGGTGCCCTTT
NONE
OsAffx.31564.1.S1_at--61--1052Chr12:1312457..1312481 (25 bp)
AGGTGCCCTTTGGATTTGGATGACA
NONE
OsAffx.31564.1.S1_at--1153--672Chr12:1312438..1312462 (25 bp)
ATGACATCGTGGATCAGCCTCACTA
NONE
OsAffx.31564.1.S1_at--88--1692Chr12:1312423..1312447 (25 bp)
AGCCTCACTATCATCTCAAGATGGT
NONE
OsAffx.31564.1.S1_at--591--2471Chr11:1401150..1401174 (25 bp)
AACACAGGCCAGGTTGAGCTAGCAA
LOC_Os11g03610
OsAffx.31564.1.S1_at--290--8072Chr12:1312328..1312347 (20 bp)
GGAGCAAATGATCATCGACCCAAAA
NONE
OsAffx.31564.1.S1_at--648--932Chr12:1312261..1312285 (25 bp)
AGGCAGATGAGAAGCTTGTTCCAGA
NONE
Target Sequence 
GTCTGGATTTACACAATCACCTCTCAAGTTCACTCAATTGAAGTGTCTAACTTTGGAAATAACTTTTGAGAGAGGTTCAT
TCGATAGAAATTCAGTCTTCCAGTTGACTAATCTTTTCGTAGCAGCTCCATTTTTGGAGGATCTTTATTTGGATATGTAT
TGTAGCTTGAACAGGTGCCCTTTGGATTTGGATGACATCGTGGATCAGCCTCACTATCATCTCAAGATGGTGTGCATATT
TGGATTTTGTGGCAACACAGGCCAGGTTGAGCTAGCAAAATGCATTCTCAGAAATGCGTTAATATTGGAGCAAATGATCA
TCGACCCAAAAGGGAGATATCGGTTGGATGGATATTTTGGGCGCCAGGAGGCAGATGAGAAGCTTGTTCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis