Browse Element(s) Details


OsAffx.31567.1.S1_at

Description tigr:9640.m00283
TID=OsAffx.31567.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lectin (probable mannose binding), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0369011/11D-mannose binding lectin family protein
LOC_Os11g0388011/11D-mannose binding lectin family protein
LOC_Os12g036807/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03660OsAffx.31566.2.S1_at9/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03660OsAffx.31566.2.S1_x_at9/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03660OsAffx.31566.1.S1_at4/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03660OsAffx.18656.1.S1_at2/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03670Os.50555.1.S1_at7/1112+1472687..1475197D-mannose binding lectin family protein
LOC_Os12g03670Os.50555.1.S2_at5/1112+1472687..1475197D-mannose binding lectin family protein
LOC_Os12g03680OsAffx.31567.1.S1_at7/1112+1476356..1486011retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g03680OsAffx.28520.1.S1_at1/1112+1476356..1486011retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g03690OsAffx.31567.1.S1_at11/1112+1490359..1492845D-mannose binding lectin family protein
LOC_Os12g03700Os.5811.1.S1_at11/1112+1493521..1494560pentatricopeptide, putative, expressed
LOC_Os12g03710Os.22510.1.A1_at2/1112+1497460..1498353heterogeneous nuclear ribonucleoprotein, putative, expressed
LOC_Os12g03720Os.18609.1.S1_at11/1112+1499415..1504525SIS domain containing protein, expressed
LOC_Os12g03720Os.50822.1.S1_at5/1112+1499415..1504525SIS domain containing protein, expressed
LOC_Os12g03730OsAffx.18657.1.S1_at11/1112+1506770..1513053zinc finger family protein, putative
LOC_Os12g03730Os.24473.1.A1_s_at11/1112+1506770..1513053zinc finger family protein, putative
LOC_Os12g03740OsAffx.19473.1.S1_s_at11/1112+1513488..1518353F-box domain containing protein, expressed
LOC_Os12g03740OsAffx.19473.1.S1_at11/1112+1513488..1518353F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31567.1.S1_at--976--10832Chr12:1490865..1490889 (25 bp)
TTGGCTTACCTTCACAGTGAGTGCT
LOC_Os12g03690
OsAffx.31567.1.S1_at--525--7392Chr12:1490849..1490873 (25 bp)
GTGAGTGCTCAGAATGGATTGTTCA
LOC_Os12g03690
OsAffx.31567.1.S1_at--861--9912Chr12:1490770..1490794 (25 bp)
TACGGATTTTGGGTTGTCTAAGTTG
LOC_Os12g03690
OsAffx.31567.1.S1_at--160--4772Chr12:1490685..1490709 (25 bp)
GCTCCAGAGTGGGTTACTAACTTAC
LOC_Os12g03690
OsAffx.31567.1.S1_at--1069--6113Chr12:1490627..1490651 (25 bp)
GAGTGATACTCCTTGAGCTAGTGAA
LOC_Os12g03690
OsAffx.31567.1.S1_at--469--10593Chr12:1490590..1490614 (25 bp)
TTCGGAATGGGTGATCCATGGGATC
LOC_Os12g03690
OsAffx.31567.1.S1_at--271--6173Chr12:1490487..1490511 (25 bp)
GAGGATCTTGTGGACTATCGATTGA
LOC_Os12g03690
OsAffx.31567.1.S1_at--821--6533Chr12:1490457..1490481 (25 bp)
GATTTCAACCATGTACAAGTGAAGC
LOC_Os12g03690
OsAffx.31567.1.S1_at--911--1113Chr12:1490440..1490464 (25 bp)
AGTGAAGCTGATGCTTGAGATTGCC
LOC_Os12g03690
OsAffx.31567.1.S1_at--1160--5333Chr12:1490400..1490424 (25 bp)
GAAGATAGGAGCAAGCGGCCAAACA
LOC_Os12g03690
OsAffx.31567.1.S1_at--415--5173Chr12:1490390..1490414 (25 bp)
GCAAGCGGCCAAACATGAACTCAGT
LOC_Os12g03690
Target Sequence 
TTGGCTTACCTTCACAGTGAGTGCTCAGAATGGATTGTTCATTGTGACATGAAGCCTGAGAACATTTTGTTGGATAAGGA
TTTGGAGCCNAAGATTACGGATTTTGGGTTGTCTAAGTTGTTAAACAGAGATGGTTCANATGCAATTTTNACAAGGATTA
GAGGGACAAGAGGGTACATGGCTCCAGAGTGGGTTACTAACTTACCANTTACAGAGAAGGTTGATGTGTATAGTTANGGA
GTGATACTCCTTGAGCTAGTGAAGGGGATTAGGATTTCGGAATGGGTGATCCATGGGATCAAGGTATGTGAGATGNATAT
TAGGATGGTTGTNAGGGCGACANGTCAGANGATGGNNTCCAATGAANANAGATCTATTGAGGATCTTGTGGACTATCGAT
TGAATGGNGATTTCAACCATGTACAAGTGAAGCTGATGCTTGAGATTGCCNTTTCATGCTTGGAGGAAGATAGGAGCAAG
CGGCCAAACATGAACTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis