Browse Element(s) Details


OsAffx.31576.1.S1_at

Description tigr:9640.m00354
TID=OsAffx.31576.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0439011/11hypothetical protein
LOC_Os02g207201/11BTB/POZ domain containing protein
LOC_Os07g140701/11SCP-like extracellular protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04350OsAffx.30816.1.S1_s_at11/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04350OsAffx.30816.1.S1_at10/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04350OsAffx.30816.2.S1_at4/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04350Os.53709.1.S1_at1/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04360Os.11301.1.S1_x_at10/1112+1850395..1851189EF hand family protein, expressed
LOC_Os12g04360Os.11301.1.S1_at9/1112+1850395..1851189EF hand family protein, expressed
LOC_Os12g04370OsAffx.31575.1.S1_x_at11/1112+1852598..1857136GRAS family transcription factor containing protein
LOC_Os12g04380OsAffx.19487.1.S1_x_at11/1112+1858794..1860188GRAS family transcription factor containing protein
LOC_Os12g04390OsAffx.31576.1.S1_at11/1112+1863322..1864544hypothetical protein
LOC_Os12g04400NANA12+1866002..1866811hypothetical protein
LOC_Os12g04410Os.49532.1.S1_s_at4/1112+1868475..1871099ankyrin repeat family protein, putative, expressed
LOC_Os12g04424Os.5263.2.S1_x_at11/1112+1881576..1887256Strictosidine synthase family protein, expressed
LOC_Os12g04424Os.5263.1.S1_x_at6/1112+1881576..1887256Strictosidine synthase family protein, expressed
LOC_Os12g04424Os.5263.1.S1_at5/1112+1881576..1887256Strictosidine synthase family protein, expressed
LOC_Os12g04440Os.11248.1.S1_at11/1112+1887941..18938702-isopropylmalate synthase B, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009627biological_processsystemic acquired resistance
GO:0009723biological_processresponse to ethylene stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005576cellular_componentextracellular region
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31576.1.S1_at--114--4357Chr12:1863364..1863388 (25 bp)
CCAGTGACGGGTTGCACGCTATGTC
LOC_Os12g04390
OsAffx.31576.1.S1_at--615--1914Chr12:1863370..1863394 (25 bp)
ACGGGTTGCACGCTATGTCTTTCAA
LOC_Os12g04390
OsAffx.31576.1.S1_at--1158--9014Chr12:1863376..1863400 (25 bp)
TGCACGCTATGTCTTTCAATTTTTT
LOC_Os12g04390
OsAffx.31576.1.S1_at--245--6635Chr12:1863403..1863427 (25 bp)
GTTGGGTTAAAGACATCACTGACGG
LOC_Os12g04390
OsAffx.31576.1.S1_at--989--2754Chr12:1863412..1863436 (25 bp)
AAGACATCACTGACGGGTCACAATA
LOC_Os12g04390
OsAffx.31576.1.S1_at--766--3852Chr12:1863421..1863442 (22 bp)
CTGACGGGTCACAATATAAGGTGTT
LOC_Os12g04390
OsAffx.31576.1.S1_at--94--10173Chr12:1863494..1863514 (21 bp)
TATAAGGTGTTGGTCACCACTGACG
LOC_Os12g04390
OsAffx.31576.1.S1_at--163--8092Chr12:1863514..1863538 (25 bp)
GGACCTTCACCCGTCAAAGATGAGG
LOC_Os12g04390
OsAffx.31576.1.S1_at--1075--6291Chr12:1863532..1863556 (25 bp)
GATGAGGACAGTCATCAGTGACCAC
LOC_Os12g04390
OsAffx.31576.1.S1_at--591--1115Chr12:1863548..1863572 (25 bp)
AGTGACCACTTATCTCTGACCAGGG
LOC_Os12g04390
OsAffx.31576.1.S1_at--371--2055Chr12:1863555..1863579 (25 bp)
ACTTATCTCTGACCAGGGCCAAATC
LOC_Os12g04390
Target Sequence 
CCAGTGACGGGTTGCACGCTATGTCTTTCAATTTTTTTTGTTGGGTTAAAGACATCACTGACGGGTCACAATATAAGGTG
TTGGTCACCACTGACGGACCTTCACCCGTCAAAGATGAGGACAGTCATCAGTGACCACTTATCTCTGACCAGGGCCAAAT
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis