Browse Element(s) Details


OsAffx.31589.1.S1_s_at

Description tigr:9640.m00437
TID=OsAffx.31589.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0520011/11DNA-binding family protein, putative, expressed
LOC_Os07g070001/11Syntaxin 132, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05160OsAffx.19503.1.S1_at11/1112+2280167..2281290Transposable element protein, putative, RnaseH
LOC_Os12g05170NANA12+2285745..2286920expressed protein
LOC_Os12g05180Os.20300.1.S1_at11/1112+2287583..2289545expressed protein
LOC_Os12g05190OsAffx.7487.1.S1_at11/1112+2299628..2300793hypothetical protein
LOC_Os12g05190OsAffx.23706.1.S1_at2/1112+2299628..2300793hypothetical protein
LOC_Os12g05200OsAffx.31589.1.S1_s_at11/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.31589.1.S1_at11/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.27256.1.S1_s_at4/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.25712.1.S1_at2/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05210Os.51775.1.S1_x_at11/1112+2311451..2312218expressed protein
LOC_Os12g05210Os.51775.1.S1_at11/1112+2311451..2312218expressed protein
LOC_Os12g05220OsAffx.31590.1.S1_at11/1112+2312768..2316461hypothetical protein
LOC_Os12g05220OsAffx.17852.2.S1_at2/1112+2312768..2316461hypothetical protein
LOC_Os12g05220OsAffx.11302.1.S1_at2/1112+2312768..2316461hypothetical protein
LOC_Os12g05230Os.17313.1.S1_at11/1112+2317855..2320808ATP-dependent RNA helicase, putative, expressed
LOC_Os12g05240Os.14491.2.S1_x_at3/1112+2328057..2329229transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g05240Os.47463.1.S1_x_at2/1112+2328057..2329229transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g05250OsAffx.19504.1.S1_at11/1112+2333466..2333743hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006944biological_processmembrane fusion
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005886cellular_componentplasma membrane
GO:0003677molecular_functionDNA binding
GO:0005486molecular_functiont-SNARE activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31589.1.S1_s_at--132--9151Chr12:2308256..2308280 (25 bp)
TGCGATGCCCATTTCTCAGGCAGCT
LOC_Os12g05200
OsAffx.31589.1.S1_s_at--151--6711Chr12:2308300..2308324 (25 bp)
GTTCGCCGCAGGTTTCGATCTCATC
LOC_Os12g05200
OsAffx.31589.1.S1_s_at--66--10051Chr12:2308361..2308385 (25 bp)
TAGAGGCGCCATGAACCTGAATTCA
LOC_Os12g05200
OsAffx.31589.1.S1_s_at--498--9011Chr12:2308378..2308402 (25 bp)
TGAATTCATCGAGCTCCAGTACTGG
LOC_Os12g05200
OsAffx.31589.1.S1_s_at--539--9232Chr12:2308392..2308416 (25 bp)
TCCAGTACTGGTTTCGCCATGGTTG
LOC_Os12g05200
OsAffx.31589.1.S1_s_at--997--9031Chr12:2308424..2308448 (25 bp)
TGCAGCTGCAAGCTCGCAGTCCATG
LOC_Os12g05200
OsAffx.31589.1.S1_s_at--853--2691Chr12:2308433..2308457 (25 bp)
AAGCTCGCAGTCCATGGTGCACAGG
LOC_Os12g05200
OsAffx.31589.1.S1_s_at--939--7171Chr12:2308476..2308500 (25 bp)
GTCTGCTTGACTCCTCAAGAGTAGG
LOC_Os12g05200
OsAffx.31589.1.S1_s_at--717--10391Chr12:2308518..2308542 (25 bp)
TTTTGTTGCCCTCGTGCCTGACATG
LOC_Os12g05200
OsAffx.31589.1.S1_s_at--434--9191Chr12:2308532..2308556 (25 bp)
TGCCTGACATGCGTTGTTGTGGCAT
LOC_Os12g05200
OsAffx.31589.1.S1_s_at--667--10831Chr12:2308548..2308572 (25 bp)
TTGTGGCATGGCTGTCACGTGACAT
LOC_Os12g05200
Target Sequence 
TGCGATGCCCATTTCTCAGGCAGCTCCTGGCAACAATGGCTGCCGTTCGCCGCAGGTTTCGATCTCATCCATGCCTCCAC
AAGCACATGCCGGTGTGGAGCAGAGTAGAGGCGCCATGAACCTGAATTCATCGAGCTCCAGTACTGGTTTCGCCATGGTT
GGGTGGCCTGCAGCTGCAAGCTCGCAGTCCATGGTGCACAGGCCTTCACCTGACATCAATGTCTGCTTGACTCCTCAAGA
GTAGGATCAATTTGTCCTATTTTTTTGTTGCCCTCGTGCCTGACATGCGTTGTTGTGGCATGGCTGTCACGTGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31589.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis