Browse Element(s) Details


OsAffx.31590.1.S1_at

Description tigr:9634.m01364
TID=OsAffx.31590.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0522011/11hypothetical protein
LOC_Os06g137009/11hypothetical protein
LOC_Os12g304444/11hypothetical protein
LOC_Os05g013502/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05180Os.20300.1.S1_at11/1112+2287583..2289545expressed protein
LOC_Os12g05190OsAffx.7487.1.S1_at11/1112+2299628..2300793hypothetical protein
LOC_Os12g05190OsAffx.23706.1.S1_at2/1112+2299628..2300793hypothetical protein
LOC_Os12g05200OsAffx.31589.1.S1_s_at11/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.31589.1.S1_at11/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.27256.1.S1_s_at4/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.25712.1.S1_at2/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05210Os.51775.1.S1_x_at11/1112+2311451..2312218expressed protein
LOC_Os12g05210Os.51775.1.S1_at11/1112+2311451..2312218expressed protein
LOC_Os12g05220OsAffx.31590.1.S1_at11/1112+2312768..2316461hypothetical protein
LOC_Os12g05220OsAffx.17852.2.S1_at2/1112+2312768..2316461hypothetical protein
LOC_Os12g05220OsAffx.11302.1.S1_at2/1112+2312768..2316461hypothetical protein
LOC_Os12g05230Os.17313.1.S1_at11/1112+2317855..2320808ATP-dependent RNA helicase, putative, expressed
LOC_Os12g05240Os.14491.2.S1_x_at3/1112+2328057..2329229transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g05240Os.47463.1.S1_x_at2/1112+2328057..2329229transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g05250OsAffx.19504.1.S1_at11/1112+2333466..2333743hypothetical protein
LOC_Os12g05260Os.2218.1.S1_at11/1112+2337073..2338158Phytosulfokines 5 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31590.1.S1_at--670--4993Chr12:18243777..18243801 (25 bp)
GCATGAAGGATGAGATGATCCATCT
NONE
OsAffx.31590.1.S1_at--354--6373Chr12:18243761..18243785 (25 bp)
GATCCATCTATATCTGAACAACTCC
NONE
OsAffx.31590.1.S1_at--732--10872Chr12:2316164..2316188 (25 bp)
TTGGCGATCCCGAGAGAGGCATGCT
LOC_Os12g05220
OsAffx.31590.1.S1_at--268--1332Chr12:2316150..2316174 (25 bp)
AGAGGCATGCTTACTGGGTGCTCCG
LOC_Os12g05220
OsAffx.31590.1.S1_at--1115--3652Chr12:2316141..2316165 (25 bp)
CTTACTGGGTGCTCCGAGGTGCCAT
LOC_Os12g05220
OsAffx.31590.1.S1_at--308--5174Chr05:193487..193507 (21 bp)
GCAAGAGCAAGTGCGCGAAGCCATC
LOC_Os05g01350
OsAffx.31590.1.S1_at--561--1134Chr05:193492..193514 (23 bp)
AGTGCGCGAAGCCATCTTGGAAGAA
LOC_Os05g01350
OsAffx.31590.1.S1_at--667--5413Chr12:18243336..18243652 (25 bp)
GAAGCCATCTTGGAAGAACGGTTAA
LOC_Os12g30444
OsAffx.31590.1.S1_at--1015--5453Chr12:2315751..2315775 (25 bp)
GAACGGTTAATGTTAACAGCATTTT
LOC_Os12g05220
OsAffx.31590.1.S1_at--926--1532Chr12:2315734..2315758 (25 bp)
AGCATTTTTACTTACTTACTCTGAA
LOC_Os12g05220
OsAffx.31590.1.S1_at--372--2052Chr12:2315725..2315749 (25 bp)
ACTTACTTACTCTGAACCACATGCC
LOC_Os12g05220
Target Sequence 
GCATGAAGGATGAGATGATCCATCTATATCTGAACAACTCCACCATGGCGTTGGCGATCCCGAGAGAGGCATGCTTACTG
GGTGCTCCGAGGTGCCATGGCATTGGGATGCTGGTGGGAGCATTCNGTATTTGCAAGGAGCAAGAGCAAGTGCGCGAAGC
CATCTTGGAAGAACGGTTAATGTTAACAGCATTTTTACTTACTTACTCTGAACCACATGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31590.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis