Browse Element(s) Details


OsAffx.31604.1.S1_at

Description tigr:9640.m00516
TID=OsAffx.31604.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0596011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05920Os.51064.1.S1_at9/1112+2723050..2725350expressed protein
LOC_Os12g05930OsAffx.7495.1.S1_at11/1112+2731573..2732169Leucine Rich Repeat family protein
LOC_Os12g05940OsAffx.8606.1.S1_s_at11/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05940OsAffx.31603.1.S1_at11/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05940OsAffx.31255.1.S1_at1/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05950OsAffx.19511.1.S1_at11/1112+2740006..2740426hypothetical protein
LOC_Os12g05960OsAffx.31604.1.S1_at11/1112+2743306..2744085hypothetical protein
LOC_Os12g05970OsAffx.7496.1.S1_at11/1112+2746577..2749107hypothetical protein
LOC_Os12g05980NANA12+2750933..2751430hypothetical protein
LOC_Os12g05990Os.19369.1.S1_at11/1112+2761324..2762601No apical meristem protein, expressed
LOC_Os12g06010Os.2235.1.S1_a_at11/1112+2767413..2776005retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06010Os.2235.3.S1_x_at9/1112+2767413..2776005retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06010Os.57499.1.S1_x_at1/1112+2767413..2776005retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06010Os.52007.1.S1_at1/1112+2767413..2776005retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31604.1.S1_at--460--6771Chr12:2743874..2743898 (25 bp)
GTTACAGCACGTGGCCCGAGAGGTT
LOC_Os12g05960
OsAffx.31604.1.S1_at--31--6031Chr12:2743857..2743881 (25 bp)
GAGAGGTTCACCTTGCACAAGATCA
LOC_Os12g05960
OsAffx.31604.1.S1_at--126--6471Chr12:2743788..2743812 (25 bp)
GATAACAACATCGTCTCTTTCAGGC
LOC_Os12g05960
OsAffx.31604.1.S1_at--689--10531Chr12:2743770..2743794 (25 bp)
TTCAGGCCGGGCATTGACACATCAT
LOC_Os12g05960
OsAffx.31604.1.S1_at--949--5271Chr12:2743703..2743727 (25 bp)
GAATGTACGAGGACATCGCCTTGTA
LOC_Os12g05960
OsAffx.31604.1.S1_at--669--2471Chr12:2743614..2743638 (25 bp)
AACACATTGTCTCGTGCTGAGCTTG
LOC_Os12g05960
OsAffx.31604.1.S1_at--954--10811Chr12:2743560..2743584 (25 bp)
TTGTCGCATCTTCAATGGCAATATA
LOC_Os12g05960
OsAffx.31604.1.S1_at--392--1731Chr12:2743517..2743541 (25 bp)
ACCAGTACCGTGTTATTTCATGCAA
LOC_Os12g05960
OsAffx.31604.1.S1_at--434--651Chr12:2743477..2743501 (25 bp)
ATGCAGTGGCACTCTGTTGATGTTC
LOC_Os12g05960
OsAffx.31604.1.S1_at--568--9631Chr12:2743454..2743478 (25 bp)
TCAGGTGTACTATTTCTCCCATGTT
LOC_Os12g05960
OsAffx.31604.1.S1_at--728--2711Chr12:2743342..2743366 (25 bp)
AAGCTTGGATGGTCAGGTCGTCTTC
LOC_Os12g05960
Target Sequence 
GTTACAGCACGTGGCCCGAGAGGTTCACCTTGCACAAGATCATCGTGTGCTCGCCGGACCTCATCGTCGCCGCCTCCCGC
CTTATCGATAACAACATCGTCTCTTTCAGGCCGGGCATTGACACATCATGGTCAGTTCTTCCATATGATGATGATGATGG
TGATCACAAGAGAATGTACGAGGACATCGCCTTGTACCGCGGCAAGCTCTACGCCCTTACTAGCAACGGGGATCTTCTTG
TCCATGAGATCAGAGATAACAACACATTGTCTCGTGCTGAGCTTGTGATTAGGGGCGCCGCAGCAGAGCCTCCATTGTCG
CATCTTCAATGGCAATATAGCATCGATGACATAGTACACCAGTACCGTGTTATTTCATGCAAGTACCTTGTTATTTCATG
CAGTGGCACTCTGTTGATGTTCAGGTGTACTATTTCTCCCATGTTGGGCACTTCAGCAAATGTGGACGATTATGAAATCA
AGTTCAAGGTGTTTGAGGCGGATTTGGAGGGTGGCCAGTGGTTAGAGGTGAAAAGCTTGGATGGTCAGGTCGTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31604.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis