Browse Element(s) Details


OsAffx.31682.1.S1_at

Description tigr:9640.m00977
TID=OsAffx.31682.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1040011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10340Os.54200.1.S1_at11/1112+5474213..5476323NB-ARC domain containing protein, expressed
LOC_Os12g10340OsAffx.31684.1.S1_at1/1112+5474213..5476323NB-ARC domain containing protein, expressed
LOC_Os12g10350OsAffx.31679.1.S1_at11/1112+5481289..5481552hypothetical protein
LOC_Os12g10360OsAffx.31681.1.S1_at11/1112+5485083..5487011NB-ARC domain containing protein
LOC_Os12g10370OsAffx.19590.1.S1_at11/1112+5488242..5488692hypothetical protein
LOC_Os12g10380NANA12+5496679..5497035hypothetical protein
LOC_Os12g10390OsAffx.31681.1.S1_at11/1112+5497827..5499710NB-ARC domain containing protein
LOC_Os12g10400OsAffx.31682.1.S1_at11/1112+5500645..5505129NB-ARC domain containing protein
LOC_Os12g10410Os.53446.1.S1_at11/1112+5507791..5513984NB-ARC domain containing protein, expressed
LOC_Os12g10410OsAffx.25541.1.S1_at1/1112+5507791..5513984NB-ARC domain containing protein, expressed
LOC_Os12g10420OsAffx.18200.1.S1_at1/1112+5521618..5523731retrotransposon protein, putative, unclassified
LOC_Os12g10430OsAffx.22699.1.S1_x_at1/1112+5523867..5528355retrotransposon protein, putative, unclassified
LOC_Os12g10440OsAffx.29073.1.S1_x_at8/1112+5529193..5535753hypothetical protein
LOC_Os12g10440Os.46610.1.A1_x_at2/1112+5529193..5535753hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31682.1.S1_at--767--9751Chr12:5504582..5504606 (25 bp)
TAAGTTACTTCCACTTGCCACCTGG
LOC_Os12g10400
OsAffx.31682.1.S1_at--703--9631Chr12:5504692..5504716 (25 bp)
TCAGGATTGATACCGCAGACCACAG
LOC_Os12g10400
OsAffx.31682.1.S1_at--480--5571Chr12:5504771..5504795 (25 bp)
GAAAGTCGTTCGTTGACCTCAAGTT
LOC_Os12g10400
OsAffx.31682.1.S1_at--831--8151Chr12:5504816..5504840 (25 bp)
GGAACGAAGGCCACGAATATTATGT
LOC_Os12g10400
OsAffx.31682.1.S1_at--409--5211Chr12:5504897..5504921 (25 bp)
GAATTGCTTATGTTAATGGCTCCGA
LOC_Os12g10400
OsAffx.31682.1.S1_at--975--2331Chr12:5504930..5504954 (25 bp)
AAAGAACACTATGTCACCTCTCTGT
LOC_Os12g10400
OsAffx.31682.1.S1_at--974--8731Chr12:5504941..5504965 (25 bp)
TGTCACCTCTCTGTTGTTGGCATTA
LOC_Os12g10400
OsAffx.31682.1.S1_at--614--3091Chr12:5504965..5504989 (25 bp)
AATAGCTTCCCAGTTGAGGCCATTA
LOC_Os12g10400
OsAffx.31682.1.S1_at--1043--6831Chr12:5504993..5505017 (25 bp)
GTTTCTGCCAGTTCAAATATCTGCG
LOC_Os12g10400
OsAffx.31682.1.S1_at--447--5351Chr12:5505031..5505055 (25 bp)
GAAGATTCCCATGACATCCAGGACG
LOC_Os12g10400
OsAffx.31682.1.S1_at--222--9231Chr12:5505047..5505071 (25 bp)
TCCAGGACGATGCTGTACGTGCAGT
LOC_Os12g10400
Target Sequence 
TAAGTTACTTCCACTTGCCACCTGGCGCACAAGTTTGCTTCCAATATTGTAGCATATTCCCACAAAATCATGAATTCAAA
AAAGGAGAATTGGTGCAGATGTGGATAGCTTCAGGATTGATACCGCAGACCACAGGCGAAGCCAAAAGGACACAAGATGT
AGGAGAAGAGTACTTGATTCAGCTGAGTAGAAAGTCGTTCGTTGACCTCAAGTTGAGAAACTTTCATTTTGGAAGGAACG
AAGGCCACGAATATTATGTGATGCACGACTTAATATATGATTTGGCAACATGGGTTTCTTCCAGTGAATGTGCAAGAATT
GCTTATGTTAATGGCTCCGAAAGAGTAAAAAGAACACTATGTCACCTCTCTGTTGTTGGCATTAATAGCTTCCCAGTTGA
GGCCATTAAAAGTTTCTGCCAGTTCAAATATCTGCGCACCATTATCTTTGAAGATTCCCATGACATCCAGGACGATGCTG
TACGTGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis