Browse Element(s) Details


OsAffx.31743.1.S1_at

Description tigr:9640.m01443
TID=OsAffx.31743.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1486011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14830Os.39997.2.S1_a_at11/1112+8484033..8488283hypothetical protein
LOC_Os12g14830OsAffx.19674.1.S1_at9/1112+8484033..8488283hypothetical protein
LOC_Os12g14830Os.39997.2.S1_x_at7/1112+8484033..8488283hypothetical protein
LOC_Os12g14830Os.39997.1.S1_x_at2/1112+8484033..8488283hypothetical protein
LOC_Os12g14840Os.32811.1.S1_at11/1112+8492235..8495385expressed protein
LOC_Os12g14850OsAffx.19675.1.S1_x_at11/1112+8504109..8504357hypothetical protein
LOC_Os12g14850OsAffx.19675.1.S1_at11/1112+8504109..8504357hypothetical protein
LOC_Os12g14850OsAffx.13714.1.S1_x_at1/1112+8504109..8504357hypothetical protein
LOC_Os12g14860OsAffx.31743.1.S1_at11/1112+8505266..8507303hypothetical protein
LOC_Os12g14860OsAffx.20705.2.S1_x_at1/1112+8505266..8507303hypothetical protein
LOC_Os12g14860OsAffx.29146.1.S1_x_at1/1112+8505266..8507303hypothetical protein
LOC_Os12g14870NANA12+8511297..8511725hypothetical protein
LOC_Os12g14880OsAffx.31744.1.S1_at11/1112+8513001..8513687hypothetical protein
LOC_Os12g14890Os.33878.1.S1_at3/1112+8515093..8517516retrotransposon protein, putative, unclassified
LOC_Os12g14890OsAffx.30350.1.S1_at1/1112+8515093..8517516retrotransposon protein, putative, unclassified
LOC_Os12g14890Os.27102.1.S1_x_at1/1112+8515093..8517516retrotransposon protein, putative, unclassified
LOC_Os12g14900NANA12+8521834..8523991retrotransposon protein, putative, unclassified
LOC_Os12g14910OsAffx.19676.1.S1_at4/1112+8528840..8529076hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31743.1.S1_at--672--7091Chr12:8506608..8506632 (25 bp)
GTCAGTTAAGGAAAGCTCCAAGAAG
LOC_Os12g14860
OsAffx.31743.1.S1_at--141--8571Chr12:8506643..8506667 (25 bp)
TGGATGTCGCCTGTGTCTTCAGCGA
LOC_Os12g14860
OsAffx.31743.1.S1_at--978--8351Chr12:8506706..8506730 (25 bp)
GGCGGAGCCTGGGTCTTTCAACCGC
LOC_Os12g14860
OsAffx.31743.1.S1_at--305--9111Chr12:8506794..8506818 (25 bp)
TGCTGACCGGGTTTTGCAGGCCACT
LOC_Os12g14860
OsAffx.31743.1.S1_at--410--8451Chr12:8506812..8506836 (25 bp)
GGCCACTGTCAAGCTCTTCGGAAGC
LOC_Os12g14860
OsAffx.31743.1.S1_at--370--9711Chr12:8506820..8506844 (25 bp)
TCAAGCTCTTCGGAAGCCTTCTTCG
LOC_Os12g14860
OsAffx.31743.1.S1_at--1143--4951Chr12:8506900..8506924 (25 bp)
GCATCGGCTTCGGATTACTCGCTGG
LOC_Os12g14860
OsAffx.31743.1.S1_at--628--4911Chr12:8506906..8506930 (25 bp)
GCTTCGGATTACTCGCTGGCGGCAC
LOC_Os12g14860
OsAffx.31743.1.S1_at--963--5991Chr12:8506954..8506978 (25 bp)
GAGACCTGGGCAGATCTTATCCCCT
LOC_Os12g14860
OsAffx.31743.1.S1_at--612--1551Chr12:8507074..8507193 (25 bp)
AGCTTAGCTGATTGGATTCTCGTGG
LOC_Os12g14860
OsAffx.31743.1.S1_at--1054--10571Chr12:8507185..8507209 (25 bp)
TTCTCGTGGCTGTTGATGGTCGTTA
LOC_Os12g14860
Target Sequence 
GTCAGTTAAGGAAAGCTCCAAGAAGAAAGGGCTCGTGGATGTCGCCTGTGTCTTCAGCGACGACGAGTCTTCGGATGAGA
CCCCTACTTCGCCTGCTGGGCGGAGCCTGGGTCTTTCAACCGCTCCCGGTGCTACGACCGACACGGGGGAAGCAGGAGGG
AGTGCTGCGGCCGGTACTTCAGCTTCTGCTGACCGGGTTTTGCAGGCCACTGTCAAGCTCTTCGGAAGCCTTCTTCGCCA
TACACCGGCTTCGCCGCCCGCCATCCAGAAAGGGAAGAAGGTGGCCGTTGAGGCATCGGCTTCGGATTACTCGCTGGCGG
CACCCCGCTTCGCCCCTGGGGATTTCGAGACCTGGGCAGATCTTATCCCCTTCGTCGAGGGGGTAAGTCATCTCGTTTCT
CCGGCTGGGAGCCCGAGCCAGTTCACCGAGTTGAACGAGTTCGACGAGGGCTATTCTGCCATCAAGAGCTTAGCTGATTG
GATTCTCGTGGCTGTTGATGGTCGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis