Browse Element(s) Details


OsAffx.31756.5.S1_x_at

Description tigr:9635.m04718
TID=OsAffx.31756.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxidoreductase, short chain dehydrogenasereductase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4687011/11oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g468601/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g160101/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g469001/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46840Os.27920.1.A1_at11/117+27994153..27995532NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46840OsAffx.22529.1.S1_s_at1/117+27994153..27995532NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46846Os.28282.2.S1_s_at11/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846Os.28282.1.S1_at11/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846Os.28282.2.S1_x_at11/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846Os.7935.2.S1_x_at4/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846OsAffx.28936.1.S1_x_at1/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.7935.1.S1_x_at11/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.7935.1.S1_at11/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.7935.2.S1_x_at11/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.28282.2.S1_x_at4/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860OsAffx.28936.1.S1_at11/117+28012126..28013280oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860OsAffx.28936.1.S1_x_at11/117+28012126..28013280oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860Os.7935.2.S1_x_at1/117+28012126..28013280oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860OsAffx.31756.5.S1_x_at1/117+28012126..28013280oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46870OsAffx.31756.5.S1_x_at11/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870Os.53426.1.S1_at4/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870Os.28282.2.S1_x_at1/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870Os.7935.2.S1_x_at1/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870OsAffx.31756.3.S1_x_at1/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46880NANA7+28023724..28029879transposon protein, putative, unclassified
LOC_Os07g46890NANA7+28030524..28033752retrotransposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.3.S1_x_at11/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.3.S1_at11/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.1.S1_x_at10/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.1.S1_at5/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.5.S1_x_at1/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46910Os.30239.1.S1_at11/117+28043187..28044605oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46910Os.16866.2.A1_x_at1/117+28043187..28044605oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46910Os.28438.4.S1_x_at1/117+28043187..28044605oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31756.5.S1_x_at--6--5752Chr07:28042047..28042071 (25 bp)
GACGTGTTCCACAACAACGCCGGCA
LOC_Os07g46900
OsAffx.31756.5.S1_x_at--18--5831Chr07:28019509..28019533 (25 bp)
GACCTCGGCGACTTCGACCGGGTGA
LOC_Os07g46870
OsAffx.31756.5.S1_x_at--456--8873Chr07:28019531..28019555 (25 bp)
TGATGGCGGTGAACGCCCGGTCGAC
LOC_Os07g46870
OsAffx.31756.5.S1_x_at--588--6331Chr07:28019597..28019621 (25 bp)
GATGCAGCGGCTGCGTGCTCTGCAC
LOC_Os07g46870
OsAffx.31756.5.S1_x_at--758--8711Chr07:28019655..28019679 (25 bp)
TGTCCCGGTGTACTCCGTGTCCAAG
LOC_Os07g46870
OsAffx.31756.5.S1_x_at--840--7451Chr07:28019671..28019695 (25 bp)
GTGTCCAAGGCCACCGTGATCGCCA
LOC_Os07g46870
OsAffx.31756.5.S1_x_at--759--9111Chr07:28019777..28019801 (25 bp)
TGCTGCTGCGGCAGATCCCGCTGCT
LOC_Os07g46870
OsAffx.31756.5.S1_x_at--258--1291Chr07:28019789..28019813 (25 bp)
AGATCCCGCTGCTCTCCGAGATGTC
LOC_Os07g46870
OsAffx.31756.5.S1_x_at--625--6031Chr07:28019806..28019830 (25 bp)
GAGATGTCCCCTAGCCTGAGCGACG
LOC_Os07g46870
OsAffx.31756.5.S1_x_at--1062--3711Chr07:28019816..28019840 (25 bp)
CTAGCCTGAGCGACGGCCTGAAGAC
LOC_Os07g46870
OsAffx.31756.5.S1_x_at--1123--6131Chr07:28019863..28019887 (25 bp)
GAGGGTGGCGCCGTCGTGCTGCTCG
LOC_Os07g46870
Target Sequence 
GACGTGTTCCACAACAACGCCGGCATCGCCGGGGCGCTGCCGCAGGACGACATGGCGGCCGTGGACCTCGGCGACTTCGA
CCGGGTGATGGCGGTGAACGCCCGGTCGACGCTCGCCGCCGTCAAGCACGCCGCGCGCGCCATGGCGCCGCGATGCAGCG
GCTGCGTGCTCTGCACGTCGAGCGGCGCGGGCGTCATCCCCGTCCCGGCTGTCCCGGTGTACTCCGTGTCCAAGGCCACC
GTGATCGCCATCGTGCGCGCGGCGGCGGAGCCGATGGCGCGCCACGGCCTGCGTGTGAACGCCATCTCGCCGGGCGCCAC
GAGGACGCCGCTGCTGCTGCGGCAGATCCCGCTGCTCTCCGAGATGTCCCCTAGCCTGAGCGACGGCCTGAAGACGACGG
TGGAGAAGGAGGTCGGCGAGGGTGGCGCCGTCGTGCTGCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31756.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis