Browse Element(s) Details


OsAffx.31780.2.S1_s_at

Description tigr:9640.m01716
TID=OsAffx.31780.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3471011/11transposon protein, putative, unclassified
LOC_Os12g1752011/11hypothetical protein
LOC_Os11g3015010/11transposon protein, putative, unclassified
LOC_Os01g592808/11transposon protein, putative, unclassified
LOC_Os06g302906/11transposon protein, putative, unclassified
LOC_Os08g251604/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34670Os.32787.2.S1_x_at11/111+19442093..19449256calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g34670Os.32787.3.S1_s_at11/111+19442093..19449256calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g34680Os.41057.1.S1_at10/111+19450258..19456039hypothetical protein
LOC_Os01g34680Os.55478.1.S1_at1/111+19450258..19456039hypothetical protein
LOC_Os01g34680Os.5306.1.S1_at1/111+19450258..19456039hypothetical protein
LOC_Os01g34690Os.8252.1.S1_s_at11/111+19456826..19460730expressed protein
LOC_Os01g34690Os.8252.1.S1_at4/111+19456826..19460730expressed protein
LOC_Os01g34690Os.37713.1.S1_at1/111+19456826..19460730expressed protein
LOC_Os01g34700Os.7133.1.S1_at11/111+19462649..19466740Dienelactone hydrolase family protein, expressed
LOC_Os01g34710OsAffx.31780.1.S1_at11/111+19469798..19475260transposon protein, putative, unclassified
LOC_Os01g34710OsAffx.31780.2.S1_s_at11/111+19469798..19475260transposon protein, putative, unclassified
LOC_Os01g34710OsAffx.31780.2.S1_x_at2/111+19469798..19475260transposon protein, putative, unclassified
LOC_Os01g34720OsAffx.6971.1.S1_at3/111+19479590..19481575retrotransposon protein, putative, unclassified
LOC_Os01g34720OsAffx.31700.1.S1_at1/111+19479590..19481575retrotransposon protein, putative, unclassified
LOC_Os01g34730Os.33878.1.S1_at2/111+19486168..19490326retrotransposon protein, putative, unclassified
LOC_Os01g34730Os.27102.1.S1_x_at1/111+19486168..19490326retrotransposon protein, putative, unclassified
LOC_Os01g34730OsAffx.22699.1.S1_x_at1/111+19486168..19490326retrotransposon protein, putative, unclassified
LOC_Os01g34740NANA1+19491271..19491708transposon protein, putative, unclassified
LOC_Os01g34750NANA1+19492781..19494166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g34760NANA1+19495149..19496834hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31780.2.S1_s_at--184--275Chr11:17027258..17027282 (25 bp)
ATATGATAATCTCATGTGGGCCTAC
LOC_Os11g30150
OsAffx.31780.2.S1_s_at--1161--6455Chr11:17027262..17027286 (25 bp)
GATAATCTCATGTGGGCCTACAATA
LOC_Os11g30150
OsAffx.31780.2.S1_s_at--211--9495Chr11:17027267..17027291 (25 bp)
TCTCATGTGGGCCTACAATAAGAAG
LOC_Os11g30150
OsAffx.31780.2.S1_s_at--510--7556Chr11:17027275..17027299 (25 bp)
GGGCCTACAATAAGAAGTTAGCCAA
LOC_Os11g30150
OsAffx.31780.2.S1_s_at--897--1155Chr11:17027290..17027314 (25 bp)
AGTTAGCCAACTGGGAGAAGTCCAA
LOC_Os11g30150
OsAffx.31780.2.S1_s_at--990--9194Chr06:17480765..17480789 (25 bp)
TGCCATCTCTCCAGAAGTTATTGGA
LOC_Os06g30290
OsAffx.31780.2.S1_s_at--588--3075Chr11:17027369..17027393 (25 bp)
AATCATTGACTCTAATGACATTAAG
LOC_Os11g30150
OsAffx.31780.2.S1_s_at--929--5674Chr11:17027385..17027409 (25 bp)
GACATTAAGACGTATCTGGCAAACA
LOC_Os11g30150
OsAffx.31780.2.S1_s_at--798--9774Chr11:17027390..17027414 (25 bp)
TAAGACGTATCTGGCAAACATTGAA
LOC_Os11g30150
OsAffx.31780.2.S1_s_at--490--5775Chr11:17027393..17027417 (25 bp)
GACGTATCTGGCAAACATTGAAGAA
LOC_Os11g30150
OsAffx.31780.2.S1_s_at--933--1355Chr11:17027414..17027438 (25 bp)
AGAAAGTTTTGAATTTGCACCTGAG
LOC_Os11g30150
Target Sequence 
ATATGATAATCTCATGTGGGCCTACAATAAGAAGTTAGCCAACTGGGAGAAGTCCAACAGAATGTGCTTAATTTATGTCA
AGGATGCCATCTCTCCAGAAGTTATTGGAGGAATCATTGACTCTAATGACATTAAGACGTATCTGGCAAACATTGAAGAA
AGTTTTGAATTTGCACCTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31780.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis