Browse Element(s) Details


OsAffx.31811.4.S1_at

Description tigr:9632.m03254
TID=OsAffx.31811.4
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3391010/11hypothetical protein
LOC_Os05g160801/11Zinc knuckle family protein
LOC_Os02g186001/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33870Os.55125.1.S1_at5/114+20331765..20332902uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os04g33880Os.55592.1.S1_at11/114+20338722..20340860TB2/DP1, HVA22 family protein, expressed
LOC_Os04g33890OsAffx.14119.1.S1_at11/114+20343403..20343927hypothetical protein
LOC_Os04g33900NANA4+20346703..20347257Ctr copper transporter family protein
LOC_Os04g33910OsAffx.31811.4.S1_at10/114+20348560..20351603hypothetical protein
LOC_Os04g33910Os.31535.1.A1_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33910OsAffx.11549.1.S1_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33910OsAffx.31811.2.S1_x_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33920OsAffx.26317.1.S2_at9/114+20356070..20357087protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os04g33930NANA4+20359790..20361089protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os04g33940OsAffx.14122.1.S1_at11/114+20361536..20362538expressed protein
LOC_Os04g33950Os.52509.1.S1_at11/114+20362600..20367754Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os04g33960OsAffx.3987.1.S1_at10/114+20369845..20371139hypothetical protein
LOC_Os04g33970OsAffx.14123.1.S1_at9/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33970Os.26986.1.A1_at7/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33970Os.46481.2.S1_x_at1/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31811.4.S1_at--296--2531Chr04:20350289..20350310 (22 bp)
AACTTTCCTACAATTGCCGGGTGCG
LOC_Os04g33910
OsAffx.31811.4.S1_at--5--9851NONE
TACAATTGCCGGGTGCGCCTATTCA
NONE
OsAffx.31811.4.S1_at--442--10075Chr05:9075046..9075067 (22 bp)
TAGGCGACATCAAGGCCCTTTCGGG
NONE
OsAffx.31811.4.S1_at--835--5651Chr04:20350991..20351463 (25 bp)
GACATCAAGGCCCTTTCGGGTGGCA
LOC_Os04g33910
OsAffx.31811.4.S1_at--5--4551Chr04:20351000..20351472 (25 bp)
GCCCTTTCGGGTGGCACCGTGGCAT
LOC_Os04g33910
OsAffx.31811.4.S1_at--71--8671Chr04:20351488..20351512 (25 bp)
TGTGGCAGCGGCAACTACCTGTGCT
LOC_Os04g33910
OsAffx.31811.4.S1_at--946--1611Chr04:20351494..20351518 (25 bp)
AGCGGCAACTACCTGTGCTGTGCAT
LOC_Os04g33910
OsAffx.31811.4.S1_at--838--8691Chr04:20351507..20351531 (25 bp)
TGTGCTGTGCATCTCTCTGACTCTG
LOC_Os04g33910
OsAffx.31811.4.S1_at--253--9511Chr04:20351520..20351544 (25 bp)
TCTCTGACTCTGTGTGGTGGCGAAG
LOC_Os04g33910
OsAffx.31811.4.S1_at--577--8931Chr04:20351524..20351548 (25 bp)
TGACTCTGTGTGGTGGCGAAGATTT
LOC_Os04g33910
OsAffx.31811.4.S1_at--426--10871Chr04:20351547..20351571 (25 bp)
TTGGAAAGGCAGCAGGAAGAATCTT
LOC_Os04g33910
Target Sequence 
AACTTTCCTACAATTGCCGGGTGCGCCTATTCACCTCCCCTCTAGGCGACATCAAGGCCCTTTCGGGTGGCACCGTGGCA
TGTGTGGAGGTAGCACTGTGGCAGCGGCAACTACCTGTGCTGTGCATCTCTCTGACTCTGTGTGGTGGCGAAGATTTGGA
AAGGCAGCAGGAAGAATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31811.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis