Browse Element(s) Details


OsAffx.31869.3.S1_x_at

Description gb:NM_194888.1
DB_XREF= gi:37531135
TID=OsAffx.31869.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0028C16.19), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0626011/11retrotransposon protein, putative, unclassified
LOC_Os04g1395010/11retrotransposon protein, putative, unclassified
LOC_Os01g232308/11retrotransposon protein, putative, unclassified
LOC_Os07g331708/11retrotransposon protein, putative, unclassified
LOC_Os05g298408/11retrotransposon protein, putative, unclassified
LOC_Os07g163608/11retrotransposon protein, putative, unclassified
LOC_Os06g386037/11retrotransposon protein, putative, unclassified
LOC_Os03g323706/11retrotransposon protein, putative, unclassified
LOC_Os05g243805/11retrotransposon protein, putative, unclassified
LOC_Os05g179005/11retrotransposon protein, putative, unclassified
LOC_Os05g243705/11retrotransposon protein, putative, unclassified
LOC_Os07g192405/11retrotransposon protein, putative, unclassified
LOC_Os12g234205/11retrotransposon protein, putative, unclassified
LOC_Os03g237705/11retrotransposon protein, putative, unclassified
LOC_Os10g099604/11retrotransposon protein, putative, unclassified, expressed
LOC_Os07g458504/11retrotransposon protein, putative, unclassified
LOC_Os10g226204/11retrotransposon protein, putative, unclassified
LOC_Os09g010104/11retrotransposon protein, putative, unclassified
LOC_Os08g103704/11retrotransposon protein, putative, unclassified
LOC_Os05g445004/11retrotransposon protein, putative, unclassified
LOC_Os06g273904/11retrotransposon protein, putative, unclassified
LOC_Os10g242904/11retrotransposon protein, putative, unclassified
LOC_Os05g204904/11retrotransposon protein, putative, unclassified
LOC_Os08g052303/11retrotransposon protein, putative, unclassified
LOC_Os01g380493/11retrotransposon protein, putative, unclassified
LOC_Os04g444903/11retrotransposon protein, putative, unclassified
LOC_Os04g077303/11retrotransposon protein, putative, unclassified
LOC_Os01g380583/11retrotransposon protein, putative, unclassified
LOC_Os08g165103/11retrotransposon protein, putative, unclassified
LOC_Os02g219502/11retrotransposon protein, putative, unclassified
LOC_Os05g173402/11retrotransposon protein, putative, unclassified
LOC_Os07g130002/11retrotransposon protein, putative, unclassified
LOC_Os10g242802/11retrotransposon protein, putative, unclassified
LOC_Os09g136402/11retrotransposon protein, putative, unclassified
LOC_Os04g159991/11retrotransposon protein, putative, unclassified
LOC_Os05g424321/11retrotransposon protein, putative, unclassified
LOC_Os04g166491/11retrotransposon protein, putative, unclassified
LOC_Os04g078601/11retrotransposon protein, putative, unclassified
LOC_Os10g048101/11retrotransposon protein, putative, unclassified
LOC_Os12g196201/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06200OsAffx.20742.4.S1_x_at11/1110+3161978..3169245retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06200OsAffx.29386.2.S1_at1/1110+3161978..3169245retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06210NANA10+3172470..3173890hypothetical protein
LOC_Os10g06220NANA10+3176345..3177986retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06230NANA10+3178469..3182435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06240Os.46314.2.S1_x_at4/1110+3184877..3187834transposon protein, putative, unclassified
LOC_Os10g06240OsAffx.32036.1.S1_at1/1110+3184877..3187834transposon protein, putative, unclassified
LOC_Os10g06240Os.47114.1.S1_x_at1/1110+3184877..3187834transposon protein, putative, unclassified
LOC_Os10g06250OsAffx.20673.1.S1_x_at2/1110+3189991..3191743retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06250Os.27691.1.S1_x_at1/1110+3189991..3191743retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06250OsAffx.20695.1.S1_x_at1/1110+3189991..3191743retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06250OsAffx.30496.1.S1_x_at1/1110+3189991..3191743retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06260OsAffx.31869.3.S1_s_at11/1110+3192439..3193539retrotransposon protein, putative, unclassified
LOC_Os10g06260OsAffx.31869.3.S1_x_at11/1110+3192439..3193539retrotransposon protein, putative, unclassified
LOC_Os10g06260OsAffx.31869.3.S1_at8/1110+3192439..3193539retrotransposon protein, putative, unclassified
LOC_Os10g06260OsAffx.31869.5.S1_x_at4/1110+3192439..3193539retrotransposon protein, putative, unclassified
LOC_Os10g06260OsAffx.31869.4.S1_x_at3/1110+3192439..3193539retrotransposon protein, putative, unclassified
LOC_Os10g06270Os.27691.1.S1_x_at1/1110+3197395..3202967retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g06280OsAffx.20736.1.S1_at11/1110+3206055..3207031retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06290NANA10+3209701..3216421retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31869.3.S1_x_at--795--1451Chr10:3193109..3193133 (25 bp)
AGAAGACGCACATACCTACAGGAGT
LOC_Os10g06260
OsAffx.31869.3.S1_x_at--1090--88926Chr10:11416398..11416422 (25 bp)
TGAGTTCCGGGCACTTAAGCAAAAG
LOC_Os10g22620
OsAffx.31869.3.S1_x_at--881--11121Chr10:5167307..5167330 (24 bp)
AGTGACGGAATATCTTCATGAGTTC
LOC_Os10g09960
OsAffx.31869.3.S1_x_at--1111--88925Chr12:11440337..11440475 (25 bp)
TGAGTTCAATCGTCTAGCTCGCTAT
LOC_Os12g19620
OsAffx.31869.3.S1_x_at--1109--38722Chr10:5167415..5167439 (25 bp)
CTGTCAGTTATGTTGATCTCTCATG
LOC_Os10g09960
OsAffx.31869.3.S1_x_at--60--35328Chr09:2286911..2286935 (25 bp)
CATGACTATGAGGATTTTCAGGAGT
NONE
OsAffx.31869.3.S1_x_at--304--8014Chr07:19803218..19803341 (25 bp)
GGATGGACAATCGACAGTCACAACA
LOC_Os07g33170
OsAffx.31869.3.S1_x_at--655--32713Chr10:11416756..11416780 (25 bp)
CAACAGTTGGGCATCAGTGGTGAGA
LOC_Os10g22620
OsAffx.31869.3.S1_x_at--319--63117Chr10:11416816..11416840 (25 bp)
GATGAGCAAGCTACTCAATCAGTGT
LOC_Os10g22620
OsAffx.31869.3.S1_x_at--312--11115Chr10:11416836..11416860 (25 bp)
AGTGTCATTTCAGCAGGATCAGTCT
LOC_Os10g22620
OsAffx.31869.3.S1_x_at--99--5957Chr10:5167748..5167772 (25 bp)
GAGCAGCGGGTGTGTTTCAATTGTT
LOC_Os10g09960
Target Sequence 
AGAAGACGCACATACCTACAGGAGTTGTTTCTTTGAAGAAGCGTGAGTTCCGGGCACTTAAGCAAAAGGATCGTACAGTG
ACGGAATATCTTCATGAGTTCAATCGTCTAGCTCGCTATGCTCCAGAAGATGTGCGTACTGACGAGGAAAGGCAGGAGAA
GTTTTTGGAAGGCTTAAAGGATGAGCTGTCAGTTATGTTGATCTCTCATGACTATGAGGATTTTCAGGAGTTGGTTGATA
AAGCAATTCGACTGGAAGACAAGAAGAACAGGATGGACAATCGACAGTCACAACAGTTGGGCATCAGTGGTGAGATTAAC
TCAGAGACTAATGCAAGCAATGAAGGCAATGATGAGCAAGCTACTCAATCAGTGTCATTTCAGCAGGATCAGTCTCAAGA
AGATAACAGTAATGGAAGGGAGCAGCGGGTGTGTTTCAATTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31869.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis