Browse Element(s) Details


OsAffx.3200.1.S1_s_at

Description tigr:9631.m01055
TID=OsAffx.3200.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 557-2776
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1140011/11Targeting protein for Xklp2 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11340Os.12674.1.S1_s_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11340Os.50482.1.S1_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11350OsAffx.2198.4.S1_at11/113+5828014..5829498Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os03g11360Os.16437.1.S1_at11/113+5831689..5836578Leucine Rich Repeat family protein, expressed
LOC_Os03g11370Os.7036.1.S1_at11/113+5837342..5839072B3 DNA binding domain containing protein, expressed
LOC_Os03g11380OsAffx.25055.1.S1_s_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11380OsAffx.25055.1.S1_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11380Os.51936.1.S1_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11390OsAffx.25056.1.S1_at10/113+5843172..5843815hypothetical protein
LOC_Os03g11400OsAffx.3200.1.S1_s_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400Os.51997.1.S1_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400OsAffx.3200.1.S1_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11410Os.10891.1.S1_at2/113+5849271..5853928Mitochondrial processing peptidase beta subunit, mitochondrial precursor, putative, expressed
LOC_Os03g11420Os.15799.1.S1_at11/113+5855359..5862419Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g11430OsAffx.12826.1.S1_at11/113+5870390..5872403hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3200.1.S1_s_at--212--1131Chr03:5847237..5847261 (25 bp)
AGTGCTTGATAAAGCCACCAGTCAA
LOC_Os03g11400
OsAffx.3200.1.S1_s_at--783--7071Chr03:5847257..5847281 (25 bp)
GTCAAAGAAACCACCGAGCCTGTTG
LOC_Os03g11400
OsAffx.3200.1.S1_s_at--889--8811Chr03:5847277..5847301 (25 bp)
TGTTGACCTTGTTCTGCACAGTGAT
LOC_Os03g11400
OsAffx.3200.1.S1_s_at--929--1571Chr03:5847552..5847576 (25 bp)
AGCTCAGCCAATGCCGTACTTTGAT
LOC_Os03g11400
OsAffx.3200.1.S1_s_at--301--10791Chr03:5847572..5847596 (25 bp)
TTGATCGGCCGTTCATTCCAAAAAG
LOC_Os03g11400
OsAffx.3200.1.S1_s_at--1033--8151Chr03:5847840..5847864 (25 bp)
GGAACCAAAATTTCATCCTCGGCCG
LOC_Os03g11400
OsAffx.3200.1.S1_s_at--979--9251Chr03:5847855..5847878 (24 bp)
TCCTCGGCCGGAAAAACAGTCATGT
LOC_Os03g11400
OsAffx.3200.1.S1_s_at--898--2131Chr03:5847870..5848031 (25 bp)
ACAGTCATGTTTATGTCGACAGCGA
LOC_Os03g11400
OsAffx.3200.1.S1_s_at--169--5651Chr03:5848024..5848048 (25 bp)
GACAGCGATGCATGGACACCGGAAT
LOC_Os03g11400
OsAffx.3200.1.S1_s_at--1022--5631Chr03:5848038..5848062 (25 bp)
GACACCGGAATGCTGATTTCATCAT
LOC_Os03g11400
OsAffx.3200.1.S1_s_at--778--751Chr03:5848061..5848085 (25 bp)
ATGTCTTCATGATCAGTCGACTGTA
LOC_Os03g11400
Target Sequence 
AGTGCTTGATAAAGCCACCAGTCAAAGAAACCACCGAGCCTGTTGACCTTGTTCTGCACAGTGATGTACGAGCAATTGAA
CGTGCAGAATTTGATCAATATGTGTCAGAAAGGAACAAGTTCGCTGAGCAACTAAGGCTGGAGAGGGAGCGGCAGCAGAA
GCTGGAGGAGGAAGAGATGATCAAGCAGCTCAGGAAAGAGCTGGTTCCTAAAGCTCAGCCAATGCCGTACTTTGATCGGC
CGTTCATTCCAAAAAGTAGCACACCAGCATTATCTTACCATTTGCACAAGTTACTAATACTCAGTTCTATCTCTGGTTTG
TTCTCCAAAAGATCTGCAAAACCAGCAACAGTTCCAAAGGAACCAAAATTTCATCCTCGGCCGGAAAAACAGTCATGTTT
ATGTCGACAGCGATGCATGGACACCGGAATGCTGATTTCATCATGTCTTCATGATCAGTCGACTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3200.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis