Browse Element(s) Details


OsAffx.32001.1.S1_at

Description tigr:9640.m03226
TID=OsAffx.32001.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0961011/11retrotransposon protein, putative, unclassified
LOC_Os12g3314011/11hypothetical protein
LOC_Os02g1874010/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09580NANA10+4935490..4943156transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09590NANA10+4947051..4947536hypothetical protein
LOC_Os10g09600OsAffx.20689.1.S1_x_at11/1110+4953486..4953926retrotransposon protein, putative, unclassified
LOC_Os10g09600OsAffx.20673.1.S1_x_at1/1110+4953486..4953926retrotransposon protein, putative, unclassified
LOC_Os10g09600OsAffx.20695.1.S1_x_at1/1110+4953486..4953926retrotransposon protein, putative, unclassified
LOC_Os10g09610OsAffx.32001.1.S1_at11/1110+4956155..4962327retrotransposon protein, putative, unclassified
LOC_Os10g09610OsAffx.20687.1.S1_at11/1110+4956155..4962327retrotransposon protein, putative, unclassified
LOC_Os10g09620OsAffx.18192.1.S1_at11/1110+4965016..4970719Protein kinase domain containing protein, expressed
LOC_Os10g09630OsAffx.30358.1.S1_at11/1110+4979240..4980064hypothetical protein
LOC_Os10g09640OsAffx.18193.1.S1_at11/1110+4981313..4982152hypothetical protein
LOC_Os10g09640OsAffx.26961.1.S1_x_at1/1110+4981313..4982152hypothetical protein
LOC_Os10g09650OsAffx.30359.1.S1_at11/1110+4987138..4987890Zinc knuckle family protein
LOC_Os10g09650OsAffx.11284.2.S1_at1/1110+4987138..4987890Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32001.1.S1_at--856--8032Chr12:20023945..20023969 (25 bp)
GGAGTCGAGAACCTGTTCCTGACAA
LOC_Os12g33140
OsAffx.32001.1.S1_at--909--8814Chr12:20024006..20024030 (25 bp)
TGTTGATGGCTCATTCCAGGAGAGT
LOC_Os12g33140
OsAffx.32001.1.S1_at--85--10214Chr12:20024081..20024105 (25 bp)
TATTTTTGCTGCTTGTGGACATGTT
LOC_Os12g33140
OsAffx.32001.1.S1_at--316--5553Chr12:20024127..20024151 (25 bp)
GAAACGGAACTCCTTGCCTGCAGGG
LOC_Os12g33140
OsAffx.32001.1.S1_at--150--8913Chr12:20024198..20024222 (25 bp)
TGAGACAGACTGCTTGGCGATGATC
LOC_Os12g33140
OsAffx.32001.1.S1_at--811--8473Chr12:20024212..20024236 (25 bp)
TGGCGATGATCCATCTTTTCCGCGA
LOC_Os12g33140
OsAffx.32001.1.S1_at--908--10373Chr12:20024227..20024251 (25 bp)
TTTTCCGCGATGCAACAGGTGCTAA
LOC_Os12g33140
OsAffx.32001.1.S1_at--401--7294Chr12:20024245..20024269 (25 bp)
GTGCTAAATCGGAGCTGGCGTTTTT
LOC_Os12g33140
OsAffx.32001.1.S1_at--197--1274Chr12:20024278..20024302 (25 bp)
AGATAGATTCTCTCTTGGTGGGAAA
LOC_Os12g33140
OsAffx.32001.1.S1_at--689--354Chr12:20024365..20024389 (25 bp)
ATAAGGGCCGTTGTGACAAGATCAC
LOC_Os12g33140
OsAffx.32001.1.S1_at--580--1273Chr12:20024383..20024407 (25 bp)
AGATCACACAGTTTTGGCCGGACAA
LOC_Os12g33140
Target Sequence 
GGAGTCGAGAACCTGTTCCTGACAAATGGTNGAAGCCNCTCCCAGGAAGCATGAAACTGAATGTTGATGGCTCATTCCAG
GAGAGTGACGGCAAGGGTGGTATAGGCGCTGTGTTGCGCAATTGCACAGGAGAGGTTATTTTTGCTGCTTGTGGACATGT
TGATNGNTGTAGCAGTGCTTTGGAAACGGAACTCCTTGCCTGCAGGGATGGTCTTGCNCTCGCCCTACAATGGACCCTGC
TNCCAATAGTGATTGAGACAGACTGCTTGGCGATGATCCATCTTTTCCGCGATGCAACAGGTGCTAAATCGGAGCTGGCG
TTTTTANTCAGGGAGATAGATTCTCTCTTGGTGGGAAATAGGGATATTAGCTTCANTNANNNNNNNAGAAGTCAAAATCA
TATTAGCCACTATTTAGCAAATAAGGGCCGTTGTGACAAGATCACACAGTTTTGGCCGGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis