Browse Element(s) Details


OsAffx.32076.1.S1_x_at

Description tigr:9640.m03691
TID=OsAffx.32076.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3798011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37939Os.56047.1.S1_at11/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939OsAffx.7824.1.S1_s_at10/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939Os.37965.1.S1_at9/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939OsAffx.32075.1.S1_at2/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37960Os.21433.1.S1_at11/1112+23284584..23289908Diaminopimelate epimerase, putative, expressed
LOC_Os12g37970Os.11638.1.S1_at11/1112+23292073..23293502myb family transcription factor, putative, expressed
LOC_Os12g37980OsAffx.32076.1.S1_x_at11/1112+23304643..23311305Protein kinase domain containing protein
LOC_Os12g37980OsAffx.32076.1.S1_at11/1112+23304643..23311305Protein kinase domain containing protein
LOC_Os12g37990NANA12+23315183..23315962hypothetical protein
LOC_Os12g38000Os.11297.1.S1_at11/1112+23316456..2331830460S ribosomal protein L2, putative, expressed
LOC_Os12g38000OsAffx.3064.1.S1_at1/1112+23316456..2331830460S ribosomal protein L2, putative, expressed
LOC_Os12g38010OsAffx.7826.2.S1_at11/1112+23318668..23319649Metallothionein-like protein 1, putative, expressed
LOC_Os12g38020OsAffx.22641.1.S1_at8/1112+23321375..23326043retrotransposon protein, putative, unclassified
LOC_Os12g38030OsAffx.22848.4.S1_at2/1112+23332989..23338947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g38030OsAffx.22848.4.S1_x_at1/1112+23332989..23338947retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32076.1.S1_x_at--130--8811Chr12:23305211..23305235 (25 bp)
TGTTCGCCGGCGACGTCGTGACCCA
LOC_Os12g37980
OsAffx.32076.1.S1_x_at--993--2151Chr12:23305133..23305157 (25 bp)
ACACCTCGCGCCTCAGCGAGAAGAG
LOC_Os12g37980
OsAffx.32076.1.S1_x_at--1009--4451Chr12:23305124..23305148 (25 bp)
GCCTCAGCGAGAAGAGCGACGTCTA
LOC_Os12g37980
OsAffx.32076.1.S1_x_at--701--1371Chr12:23305016..23305040 (25 bp)
AGAGCGTCCACCTCGCCGTGTGGGC
LOC_Os12g37980
OsAffx.32076.1.S1_x_at--984--791Chr12:23304942..23304966 (25 bp)
ATGGGAGGCTGCTTCGAGGTGAACT
LOC_Os12g37980
OsAffx.32076.1.S1_x_at--781--9411Chr12:23304842..23304866 (25 bp)
TCGTCGCCGAGCTGAAGGAGTGCCT
LOC_Os12g37980
OsAffx.32076.1.S1_x_at--721--4232Chr12:23304836..23304860 (25 bp)
CCGAGCTGAAGGAGTGCCTCGAGCT
LOC_Os12g37980
OsAffx.32076.1.S1_x_at--889--3891Chr12:23304795..23304819 (25 bp)
CTGGGACGCGGCTACAGCTGCTACA
LOC_Os12g37980
OsAffx.32076.1.S1_x_at--233--1631Chr12:23304723..23304747 (25 bp)
AGCGGCGCCGCCAATATCAGCGCGG
LOC_Os12g37980
OsAffx.32076.1.S1_x_at--712--4611Chr12:23304687..23304711 (25 bp)
GCGAGTGTCAGTGACGCCCAGATCG
LOC_Os12g37980
OsAffx.32076.1.S1_x_at--940--1111Chr12:23304678..23304702 (25 bp)
AGTGACGCCCAGATCGGCGAGCTGA
LOC_Os12g37980
Target Sequence 
TGTTCGCCGGCGACGTCGTGACCCACGTCACCACGCAGCCGGCCGGCACGCTGGGCTACCTCGACCCGGAGTACTACCAC
ACCTCGCGCCTCAGCGAGAAGAGCGACGTCTACAGCTTCGGCGTCGTCCTCCTCGAGCTCGTCACCGGCCGCCCACCGGC
CGTCCCCCTCGGCGACGGCGACGGCGGCGGCGGCGAGAGCGTCCACCTCGCCGTGTGGGCGAGGCAGCGGCTGGCCGAGG
GCGACATCGAGAGCGTCGCGGACGCGGCCATGGGAGGCTGCTTCGAGGTGAACTCGGCGTGGAAGGTGGCGGAGCTGGCG
CTGCGGTGCAAGGAGCGGCCGTCGCGGGAGCGGCCGGCCATGGCGGACGTCGTCGCCGAGCTGAAGGAGTGCCTCGAGCT
GGAGGCGTCACGCGCGCTGGGACGCGGCTACAGCTGCTACAGCAGCGGCAGCGGCGGCGGCAGCTCGGTGGCGACGACGA
CGACGACGAGCGGCGCCGCCAATATCAGCGCGGCGGCGTCGGCGGCGAGTGTCAGTGACGCCCAGATCGGCGAGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32076.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis