Browse Element(s) Details


OsAffx.32277.1.S1_x_at

Description gb:BA000029.2
DB_XREF= gi:47118326
GEN=orf224
TID=OsAffx.32277.1
CNT=1
FEA=DNA_22
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein (Oryza sativa (japonica cultivar-group)) mitochondrion
PROD=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3408011/11expressed protein
LOC_Os12g341495/11hypothetical protein
LOC_Os12g340795/11hypothetical protein
LOC_Os12g339395/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33930OsAffx.19953.7.S1_s_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.32275.1.S1_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.32273.1.S1_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33930OsAffx.19953.6.S1_s_at11/1112+20424218..20425311Ribosomal protein S12 containing protein
LOC_Os12g33939OsAffx.32277.1.S1_x_at5/1112+20430372..20430725hypothetical protein
LOC_Os12g33950OsAffx.32008.1.S1_at11/1112+20440473..20442136Myb-related protein, putative
LOC_Os12g33960OsAffx.32009.2.S1_at11/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32334.1.S1_s_at11/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32334.1.S1_x_at7/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32336.1.A1_at5/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g33960OsAffx.32335.1.A1_at1/1112+20443281..20445840translation initiation factor IF-1 family protein
LOC_Os12g34080OsAffx.32277.1.S1_x_at11/1112+20448493..20450249expressed protein
LOC_Os12g34080OsAffx.1869.1.S1_at11/1112+20448493..20450249expressed protein
LOC_Os12g33980NANA12+20463491..20464756retrotransposon protein, putative, unclassified
LOC_Os12g33990OsAffx.32010.2.S1_s_at11/1112+20468512..20470653hypothetical protein
LOC_Os12g33990OsAffx.32010.4.S1_at11/1112+20468512..20470653hypothetical protein
LOC_Os12g34000NANA12+20472986..20476347hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32277.1.S1_x_at--771--5654Chr12:20664236..20664260 (25 bp)
GACAGATTCCCTCAATCTCGAGATA
NONE
OsAffx.32277.1.S1_x_at--681--10314Chr12:20664178..20664202 (25 bp)
TTTCTTCAGTGGTTTGTGGACCGAT
NONE
OsAffx.32277.1.S1_x_at--122--8535Chr12:20664162..20664186 (25 bp)
TGGACCGATAGACCTTACCTTATTT
NONE
OsAffx.32277.1.S1_x_at--991--895Chr12:20664083..20664107 (25 bp)
AGGCTTTTTCCTCTACTCTAATTGG
NONE
OsAffx.32277.1.S1_x_at--410--3175Chr12:20664064..20664088 (25 bp)
AATTGGATCCTTCTCTGGTTTGTTT
NONE
OsAffx.32277.1.S1_x_at--516--3435Chr12:20664017..20664041 (25 bp)
CAGAGGTTGCTTCCGCTATGGAGAA
NONE
OsAffx.32277.1.S1_x_at--721--4254Chr12:20663982..20664006 (25 bp)
CCTGGGCCTAGTGAAGCGGGTCCTT
LOC_Os12g34149
OsAffx.32277.1.S1_x_at--300--7614Chr12:20663944..20663968 (25 bp)
GGGCAAGTCAGCTGAAGCCTCTACT
LOC_Os12g34149
OsAffx.32277.1.S1_x_at--115--7214Chr12:20663917..20663941 (25 bp)
GTCGTCCTCTTTTTTCAATGGGCTT
LOC_Os12g34149
OsAffx.32277.1.S1_x_at--164--10195Chr12:20663820..20663844 (25 bp)
TATTCAATTCCGGAAGTTCCCCTGG
LOC_Os12g34149
OsAffx.32277.1.S1_x_at--400--5435Chr12:20663737..20663761 (25 bp)
GAACCCTGAACCTCAACTTGGAGAA
LOC_Os12g34149
Target Sequence 
GACAGATTCCCTCAATCTCGAGATACGAACGTATCGTGTCAAAATTTATTGGAAAATTTTTCTTCAGTGGTTTGTGGACC
GATAGACCTTACCTTATTTTTATTTTTATTTCCCTCATTTTTTTGGGACTTTATATTGTCAGAAGGAGGAGGGAGGCTTT
TTCCTCTACTCTAATTGGATCCTTCTCTGGTTTGTTTTCGTTTTTTTTTGTGGAAGGCCCAGAGGTTGCTTCCGCTATGG
AGAACCCACCAGGGCCTGGGCCTAGTGAAGCGGGTCCTTCCGGATCCGCTGCGGGCAAGTCAGCTGAAGCCTCTACTCCG
TCGTCCTCTTTTTTCAATGGGCTTTCGGGCCAGATACCCGCACCGGATTCCCCCGGGGAAGAGGTGCCGCAAGGGGAACA
GCCCCGTTTTGACCCTTATTCAATTCCGGAAGTTCCCCTGGAACACGTATTCGGGGCTGTTCCAGATCGGGGAGAGCCAT
CCACAAGCCACACCCCGCCGAACCCTGAACCTCAACTTGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32277.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis