Browse Element(s) Details


OsAffx.32280.1.S1_at

Description gb:BA000029.2
DB_XREF= gi:47118326
GEN=cox2
TID=OsAffx.32280.1
CNT=1
FEA=DNA_25
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome c oxidase subunit 2 (Oryza sativa (japonica cultivar-group)) mitochondrion
PROD=Cytochrome c oxidase subunit 2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g673641/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67330Os.39420.1.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_x_at10/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67340Os.12116.1.S1_at11/111+39418583..39422180Protein kinase domain containing protein, expressed
LOC_Os01g67350OsAffx.11771.1.S1_at11/111+39425858..39428613expressed protein
LOC_Os01g67350Os.39110.1.S1_s_at11/111+39425858..39428613expressed protein
LOC_Os01g67360Os.30516.1.S1_at11/111+39429126..39432613methyltransferase family protein, expressed
LOC_Os01g67364OsAffx.32292.1.A1_at7/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.30475.4.S1_at3/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32280.1.S1_at1/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32228.1.A1_x_at1/111+39441530..39444085hypothetical protein
LOC_Os01g67370Os.9896.1.S1_at10/111+39456586..39461707pentatricopeptide, putative, expressed
LOC_Os01g67370Os.51993.1.S1_at8/111+39456586..39461707pentatricopeptide, putative, expressed
LOC_Os01g67380OsAffx.23955.1.S1_at11/111+39463210..39463710hypothetical protein
LOC_Os01g67390Os.28994.1.S1_at11/111+39463786..39466229Pollen proteins Ole e I family protein, expressed
LOC_Os01g67400OsAffx.23956.1.S1_at10/111+39467293..39467611hypothetical protein
LOC_Os01g67410OsAffx.23957.1.S1_x_at11/111+39468416..39472091AP2 domain containing protein
LOC_Os01g67410OsAffx.23957.1.S1_at11/111+39468416..39472091AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006075biological_processbeta-1,3 glucan biosynthesis
GO:0009556biological_processmicrosporogenesis
GO:0009860biological_processpollen tube growth
GO:0010208biological_processpollen wall formation
GO:0000148cellular_component1,3-beta-glucan synthase complex
GO:0009504cellular_componentcell plate
GO:0003843molecular_function1,3-beta-glucan synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32280.1.S1_at--645--1492Chr05:4638086..4638110 (25 bp)
AGCAAACTAATCCAATCCCGCAAAG
NONE
OsAffx.32280.1.S1_at--266--10171Chr04:16101780..16101804 (25 bp)
TATTCGGACCATATTTCCTAGTGTC
NONE
OsAffx.32280.1.S1_at--129--212Chr05:4638150..4638173 (24 bp)
ATTTCCTAGTGTCATTCTTTTGTTC
NONE
OsAffx.32280.1.S1_at--819--10791Chr04:16101749..16101773 (25 bp)
TTGTTCATTGCTATACCATCGTTTG
NONE
OsAffx.32280.1.S1_at--521--1731Chr04:16101735..16101759 (25 bp)
ACCATCGTTTGCTCTGTTATACTCA
NONE
OsAffx.32280.1.S1_at--605--6951Chr05:4638222..4638246 (25 bp)
GTAGATCCAGCCATTACTATCAAAG
NONE
OsAffx.32280.1.S1_at--855--491NONE
ATCGGACTTATGAGTATTCGGACTA
NONE
OsAffx.32280.1.S1_at--782--6692Chr12:20595822..20595846 (25 bp)
GTTCCGATGAACAGTCACTCACTTT
NONE
OsAffx.32280.1.S1_at--429--5191Chr12:20595878..20595902 (25 bp)
GAATTGGGTCAATCACGTTTATTAG
NONE
OsAffx.32280.1.S1_at--1101--7911Chr12:20595919..20595943 (25 bp)
GGTTGTACCAGCCAAAACTCATCTA
NONE
OsAffx.32280.1.S1_at--996--6911Chr12:20595945..20595969 (25 bp)
GTATGATTGTAACACCCGCTGATGT
NONE
Target Sequence 
AGCAAACTAATCCAATCCCGCAAAGGATTGTTCATGGAACTACTATCGAAATTATTCGGACCATATTTCCTAGTGTCATT
CTTTTGTTCATTGCTATACCATCGTTTGCTCTGTTATACTCAATGGACGGGGTATTAGTAGATCCAGCCATTACTATCAA
AGCTATTGGACATCAATGGTATCGGACTTATGAGTATTCGGACTATAACAGTTCCGATGAACAGTCACTCACTTTTGACA
GTTATACGATTCCAGAAGATGATCCAGAATTGGGTCAATCACGTTTATTAGAAGTTGACAATAGAGTGGTTGTACCAGCC
AAAACTCATCTACGTATGATTGTAACACCCGCTGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32280.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis