Browse Element(s) Details


OsAffx.3265.1.S1_at

Description tigr:9631.m01770
TID=OsAffx.3265.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to phosphoinositide-specific phospholipase C
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1800010/11phosphoinositide-specific phospholipase C, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17960Os.53834.1.S1_at11/113+9978689..9981787expressed protein
LOC_Os03g17970OsAffx.12905.1.S1_at11/113+9982241..9982695hypothetical protein
LOC_Os03g17980Os.338.1.S2_a_at11/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.3.S1_x_at11/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.1.S2_x_at8/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.1.S1_x_at8/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.2.S1_x_at7/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.4.S1_s_at2/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17990Os.25001.1.S1_at11/113+9995552..9998559Yip1 domain containing protein, expressed
LOC_Os03g18000OsAffx.3265.1.S1_at10/113+10003272..10003838phosphoinositide-specific phospholipase C, putative
LOC_Os03g18010OsAffx.25128.1.S1_at10/113+10004299..10006802phosphoinositide-specific phospholipase C, putative, expressed
LOC_Os03g18020OsAffx.12906.1.S1_at11/113+10007156..10008084rhodanese-like family protein, putative
LOC_Os03g18020Os.41415.2.S1_x_at1/113+10007156..10008084rhodanese-like family protein, putative
LOC_Os03g18030Os.17112.1.S1_at11/113+10017919..10023212oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g18040OsAffx.12907.1.S1_at10/113+10023756..10024847hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0007165biological_processsignal transduction
GO:0007242biological_processintracellular signaling cascade
GO:0004435molecular_functionphosphoinositide phospholipase C activity
GO:0004629molecular_functionphospholipase C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3265.1.S1_at--1129--8911Chr03:10003318..10003342 (25 bp)
TGAGCGACGCGTCCACGCCGGGCGA
LOC_Os03g18000
OsAffx.3265.1.S1_at--322--8391Chr03:10003338..10003362 (25 bp)
GGCGACGTGCGCATGCTGTTCACCC
LOC_Os03g18000
OsAffx.3265.1.S1_at--471--4711Chr03:10003372..10003396 (25 bp)
GCGGCGCGCCCTACATGGGCATCGA
LOC_Os03g18000
OsAffx.3265.1.S1_at--926--3951Chr03:10003453..10003477 (25 bp)
CGGAGCGGATCATCGACCGGGTCCT
LOC_Os03g18000
OsAffx.3265.1.S1_at--400--411Chr03:10003461..10003485 (25 bp)
ATCATCGACCGGGTCCTGCAGGAGC
LOC_Os03g18000
OsAffx.3265.1.S1_at--310--4911Chr03:10003501..10003525 (25 bp)
GCTTCGGGAAGCCGTCGCTCACCAT
LOC_Os03g18000
OsAffx.3265.1.S1_at--667--4131Chr03:10003516..10003540 (25 bp)
CGCTCACCATCGACGATTTCCAGTA
LOC_Os03g18000
OsAffx.3265.1.S1_at--135--531Chr03:10003524..10003548 (25 bp)
ATCGACGATTTCCAGTACTTCCTCT
LOC_Os03g18000
OsAffx.3265.1.S1_at--1035--5751Chr03:10003527..10003551 (25 bp)
GACGATTTCCAGTACTTCCTCTTCT
LOC_Os03g18000
OsAffx.3265.1.S1_at--756--1171Chr03:10003537..10003561 (25 bp)
AGTACTTCCTCTTCTCCGAGGACCT
LOC_Os03g18000
OsAffx.3265.1.S1_at--869--4531NONE
GCCCATCTGCCATTCCAAGGAAGAA
NONE
Target Sequence 
TGAGCGACGCGTCCACGCCGGGCGACGTGCGCATGCTGTTCACCCGCCACGCCGGCGGCGCGCCCTACATGGGCATCGAC
GAGCTCCGGCGCTACCTCGCCGCCAGCGGGGAGGCCCACGTCGACGCCGACACGGCGGAGCGGATCATCGACCGGGTCCT
GCAGGAGCGCAGCCGCACCCCGCGCTTCGGGAAGCCGTCGCTCACCATCGACGATTTCCAGTACTTCCTCTTCTCCGAGG
ACCTCAACCCGCCCATCTGCCATTCCAAGGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3265.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis